miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 3' -53.1 NC_005262.1 + 40482 0.69 0.718324
Target:  5'- gGGCUgguAUCUGgcGGACGGgcAGAACg -3'
miRNA:   3'- gCCGA---UGGACuuCCUGCCguUCUUGg -5'
24104 3' -53.1 NC_005262.1 + 48752 0.71 0.576112
Target:  5'- gGGaagaACCUGAAGGuCGGCGcGAACa -3'
miRNA:   3'- gCCga--UGGACUUCCuGCCGUuCUUGg -5'
24104 3' -53.1 NC_005262.1 + 29180 0.71 0.58594
Target:  5'- aGGCgGCCgucgccgagcugaUGGAGGucauCGGCAAGAuGCCg -3'
miRNA:   3'- gCCGaUGG-------------ACUUCCu---GCCGUUCU-UGG- -5'
24104 3' -53.1 NC_005262.1 + 16098 0.7 0.631009
Target:  5'- aCGGCgcggGCCUGAAGGAcuuccuCGGCGcGcGCa -3'
miRNA:   3'- -GCCGa---UGGACUUCCU------GCCGUuCuUGg -5'
24104 3' -53.1 NC_005262.1 + 987 0.7 0.65304
Target:  5'- uGGCgACCUGcGGGGCGGgGcgguguAGAGCUu -3'
miRNA:   3'- gCCGaUGGACuUCCUGCCgU------UCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 49688 0.7 0.657439
Target:  5'- gCGGCgcgcgcaACCUGAAccgcgacggcgugccGGGCGGC--GAACCg -3'
miRNA:   3'- -GCCGa------UGGACUU---------------CCUGCCGuuCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 14297 0.7 0.664031
Target:  5'- aGcGUUGCgUGGacgggAGGGCGGCG-GAACCg -3'
miRNA:   3'- gC-CGAUGgACU-----UCCUGCCGUuCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 43487 0.69 0.696784
Target:  5'- gCGGCgACCgucuacgcGGACGGCAAGGcggucgcaACCg -3'
miRNA:   3'- -GCCGaUGGacuu----CCUGCCGUUCU--------UGG- -5'
24104 3' -53.1 NC_005262.1 + 53794 0.69 0.696784
Target:  5'- cCGGCaACCUGAugcAGGucgacaGCGGCAcGGGCa -3'
miRNA:   3'- -GCCGaUGGACU---UCC------UGCCGUuCUUGg -5'
24104 3' -53.1 NC_005262.1 + 47635 0.72 0.543658
Target:  5'- gCGGCUGCC-GGAGGACaagaagcgcgaGGCGAucGAGCa -3'
miRNA:   3'- -GCCGAUGGaCUUCCUG-----------CCGUU--CUUGg -5'
24104 3' -53.1 NC_005262.1 + 17098 0.72 0.543658
Target:  5'- gCGGCggGCCgcgaGGAGGuccaccgcGCGGCGAuGGACCa -3'
miRNA:   3'- -GCCGa-UGGa---CUUCC--------UGCCGUU-CUUGG- -5'
24104 3' -53.1 NC_005262.1 + 45777 0.72 0.532968
Target:  5'- uCGGC-AUCgcggcGAAGGGCGGCGgcgugcugauccAGGACCg -3'
miRNA:   3'- -GCCGaUGGa----CUUCCUGCCGU------------UCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 51252 0.8 0.199817
Target:  5'- cCGGCUACg-GuAAGGACGGCAAgcuGAACCu -3'
miRNA:   3'- -GCCGAUGgaC-UUCCUGCCGUU---CUUGG- -5'
24104 3' -53.1 NC_005262.1 + 12156 0.78 0.265819
Target:  5'- aGGUUucgaACCUGAAGGccgcgcugucugcGCGGCAGGAGCa -3'
miRNA:   3'- gCCGA----UGGACUUCC-------------UGCCGUUCUUGg -5'
24104 3' -53.1 NC_005262.1 + 56791 0.76 0.333585
Target:  5'- uGGCcgGCCUGAAGGccgacgucgaGCGGCuGGAGCg -3'
miRNA:   3'- gCCGa-UGGACUUCC----------UGCCGuUCUUGg -5'
24104 3' -53.1 NC_005262.1 + 45939 0.76 0.350078
Target:  5'- gGGCUACgUcGAGGACGGCAucgAGuACCu -3'
miRNA:   3'- gCCGAUGgAcUUCCUGCCGU---UCuUGG- -5'
24104 3' -53.1 NC_005262.1 + 30575 0.75 0.384772
Target:  5'- aCGGCaGCa---AGGACGGCAAGAccGCCa -3'
miRNA:   3'- -GCCGaUGgacuUCCUGCCGUUCU--UGG- -5'
24104 3' -53.1 NC_005262.1 + 60164 0.74 0.42834
Target:  5'- cCGGCcGCCgUGAAGGcgcucggccaguggGCGGCAaccggcaaGGAGCCg -3'
miRNA:   3'- -GCCGaUGG-ACUUCC--------------UGCCGU--------UCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 49127 0.72 0.510775
Target:  5'- aGGCUGCCUaucuggcGAAGGuCGGCAcgguGGGCg -3'
miRNA:   3'- gCCGAUGGA-------CUUCCuGCCGUu---CUUGg -5'
24104 3' -53.1 NC_005262.1 + 49652 0.72 0.532968
Target:  5'- uCGGCgGCCUGcAAGGcgGCGGCAugGGGAUg -3'
miRNA:   3'- -GCCGaUGGAC-UUCC--UGCCGU--UCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.