miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 29453 0.73 0.189482
Target:  5'- cUGCGGCagaggCGCagguCGcCGAGGCGAAGGCg -3'
miRNA:   3'- -AUGCUGga---GCGc---GC-GCUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 59111 0.73 0.194441
Target:  5'- cUACGACUacuacCGCGC-CGAGGCGAAccGGCc -3'
miRNA:   3'- -AUGCUGGa----GCGCGcGCUCCGCUU--CCG- -5'
24106 3' -59.5 NC_005262.1 + 17053 0.73 0.194441
Target:  5'- cGCGAgCUCGuCGCGCGcacGGCGccgauAGGCg -3'
miRNA:   3'- aUGCUgGAGC-GCGCGCu--CCGCu----UCCG- -5'
24106 3' -59.5 NC_005262.1 + 5175 0.73 0.199514
Target:  5'- gACGGCCg-GCGuCGCG-GGCGcGGGCg -3'
miRNA:   3'- aUGCUGGagCGC-GCGCuCCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 9663 0.73 0.210006
Target:  5'- gAUGugCUCGaGCGaguAGGCGAGGGCg -3'
miRNA:   3'- aUGCugGAGCgCGCgc-UCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 33019 0.73 0.215428
Target:  5'- gGCu-CCUUaGcCGCGCGAGGCGAgguAGGCa -3'
miRNA:   3'- aUGcuGGAG-C-GCGCGCUCCGCU---UCCG- -5'
24106 3' -59.5 NC_005262.1 + 46167 0.73 0.215428
Target:  5'- cGCGAUCUC-CGaCGCGAcGGCcGAGGCg -3'
miRNA:   3'- aUGCUGGAGcGC-GCGCU-CCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 44146 0.72 0.22097
Target:  5'- -cCGGCCggacgCGCGCGCGAucgGGCaGGAGcGCg -3'
miRNA:   3'- auGCUGGa----GCGCGCGCU---CCG-CUUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 57670 0.72 0.226633
Target:  5'- cACGAucgacuUCUCGCGCGCcGGGCGc-GGCa -3'
miRNA:   3'- aUGCU------GGAGCGCGCGcUCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 57495 0.72 0.238327
Target:  5'- gGCGGCCggcgaGCGCaaGAaggcGGCGAAGGCc -3'
miRNA:   3'- aUGCUGGag---CGCGcgCU----CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 59957 0.72 0.244361
Target:  5'- aGCGGCacgUCaCGCGCGGGGCGcucGGCa -3'
miRNA:   3'- aUGCUGg--AGcGCGCGCUCCGCuu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 49640 0.72 0.2499
Target:  5'- -gUGGCCUCGCGaucgGCGgccugcaAGGCGgcGGCa -3'
miRNA:   3'- auGCUGGAGCGCg---CGC-------UCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 35229 0.72 0.250521
Target:  5'- cAUG-CCgUCGCGCGCGcGGCGGaagccccagauAGGCg -3'
miRNA:   3'- aUGCuGG-AGCGCGCGCuCCGCU-----------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 56598 0.72 0.250521
Target:  5'- gUGCGcAUC-CGCGCGUG-GGCGAcgaaGGGCa -3'
miRNA:   3'- -AUGC-UGGaGCGCGCGCuCCGCU----UCCG- -5'
24106 3' -59.5 NC_005262.1 + 33872 0.71 0.25681
Target:  5'- aACGACgC-CGCGCGCGAGacgaucguGCGucGGCc -3'
miRNA:   3'- aUGCUG-GaGCGCGCGCUC--------CGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 43033 0.71 0.263226
Target:  5'- cGCGAUCUCGUgGCGCuGGGGUucGAccGGGCa -3'
miRNA:   3'- aUGCUGGAGCG-CGCG-CUCCG--CU--UCCG- -5'
24106 3' -59.5 NC_005262.1 + 36465 0.71 0.27645
Target:  5'- gGCG-CaugggCGCGCGCGAGGCu--GGCg -3'
miRNA:   3'- aUGCuGga---GCGCGCGCUCCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 60836 0.71 0.283258
Target:  5'- -cCGGCCUaCGCGaucgGCGuGGCGAuGGCc -3'
miRNA:   3'- auGCUGGA-GCGCg---CGCuCCGCUuCCG- -5'
24106 3' -59.5 NC_005262.1 + 50408 0.71 0.283258
Target:  5'- gGCGAUCagCGcCGCG-GAGcGCGAGGGCc -3'
miRNA:   3'- aUGCUGGa-GC-GCGCgCUC-CGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 15746 0.71 0.290198
Target:  5'- gUGCGACCgaCGCGCuuGCGGGcGCGGccGGCu -3'
miRNA:   3'- -AUGCUGGa-GCGCG--CGCUC-CGCUu-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.