miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24107 3' -56.7 NC_005262.1 + 61817 1.11 0.000709
Target:  5'- uGCCUCGGCGCUCGAGUACCCGAACAGg -3'
miRNA:   3'- -CGGAGCCGCGAGCUCAUGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 60391 0.71 0.42783
Target:  5'- cGgCUCGcCGuCUCGAuGUACCUGGACGGg -3'
miRNA:   3'- -CgGAGCcGC-GAGCU-CAUGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 60331 0.71 0.42783
Target:  5'- cGCCUaCGGCGCgcgCGGcUACCUGAaggACGGc -3'
miRNA:   3'- -CGGA-GCCGCGa--GCUcAUGGGCU---UGUC- -5'
24107 3' -56.7 NC_005262.1 + 59206 0.67 0.621255
Target:  5'- uCCUgCgGGCGCUCac--GCCCGAGCAGc -3'
miRNA:   3'- cGGA-G-CCGCGAGcucaUGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 58651 0.7 0.465964
Target:  5'- gGCCg-GGCGCgCGAGUucuacgaucaaGCCCGAGCc- -3'
miRNA:   3'- -CGGagCCGCGaGCUCA-----------UGGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 57179 0.66 0.674719
Target:  5'- cCCUCGcCGCUCGuGUcgcucccgcucgACCCGGACc- -3'
miRNA:   3'- cGGAGCcGCGAGCuCA------------UGGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 56118 0.69 0.536582
Target:  5'- cGUUUCGucgacccgaccGCGC-CGAGcgACCCGAACAGc -3'
miRNA:   3'- -CGGAGC-----------CGCGaGCUCa-UGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 53726 0.66 0.714775
Target:  5'- gGCCgUGGCGCUCGAacgcgacuucaACCCGAcccACAa -3'
miRNA:   3'- -CGGaGCCGCGAGCUca---------UGGGCU---UGUc -5'
24107 3' -56.7 NC_005262.1 + 48691 0.69 0.536582
Target:  5'- cGCCUUcagGGCGUcggguuUCGAGUugccuccgGCCCGAgGCGGg -3'
miRNA:   3'- -CGGAG---CCGCG------AGCUCA--------UGGGCU-UGUC- -5'
24107 3' -56.7 NC_005262.1 + 48563 0.67 0.610553
Target:  5'- gGCCgcuacaaGGUGCUCGA---CCCGAACGa -3'
miRNA:   3'- -CGGag-----CCGCGAGCUcauGGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 48400 0.68 0.58921
Target:  5'- cGCCUCGcugaaGCGCggCGAaauCCCGAACAc -3'
miRNA:   3'- -CGGAGC-----CGCGa-GCUcauGGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 46258 0.74 0.267909
Target:  5'- cGCCUCGcGCGCgacCGcGUGCCCGuGCAu -3'
miRNA:   3'- -CGGAGC-CGCGa--GCuCAUGGGCuUGUc -5'
24107 3' -56.7 NC_005262.1 + 46026 0.67 0.621255
Target:  5'- uGCgCUCGGC-CUCGA--AUUCGAGCAGc -3'
miRNA:   3'- -CG-GAGCCGcGAGCUcaUGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 43236 0.66 0.716857
Target:  5'- uCCUCguguGGCGCUCGAagcaGUACgUCGuGCAGa -3'
miRNA:   3'- cGGAG----CCGCGAGCU----CAUG-GGCuUGUC- -5'
24107 3' -56.7 NC_005262.1 + 43037 0.69 0.495687
Target:  5'- aUCUCguGGCGCUgGGGUucgaCCGGGCAGg -3'
miRNA:   3'- cGGAG--CCGCGAgCUCAug--GGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 41604 0.69 0.515971
Target:  5'- aCCUUGGCGCUCaGGGcAgCgGAACGGu -3'
miRNA:   3'- cGGAGCCGCGAG-CUCaUgGgCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 39895 0.68 0.566948
Target:  5'- cGCCUCGGCG-UCGAu--CCUGAcacgguaGCAGg -3'
miRNA:   3'- -CGGAGCCGCgAGCUcauGGGCU-------UGUC- -5'
24107 3' -56.7 NC_005262.1 + 38889 0.68 0.599869
Target:  5'- uGCCUCGGCGUccUCcGGcUGgCCGAGCu- -3'
miRNA:   3'- -CGGAGCCGCG--AGcUC-AUgGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 36603 0.67 0.636251
Target:  5'- cGCUUCGGCGCaaaggggaaugcgguUCG-GUugCUGGAUGGc -3'
miRNA:   3'- -CGGAGCCGCG---------------AGCuCAugGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 35865 0.66 0.716857
Target:  5'- cGCCaUCGaGCGCUCGAacgGCgugugguucacgUCGGACAGg -3'
miRNA:   3'- -CGG-AGC-CGCGAGCUca-UG------------GGCUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.