miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 63684 0.69 0.390412
Target:  5'- aGGUCGGuCGCCggccggugacaugcGCagaAGCGUgCGGCGCGg -3'
miRNA:   3'- gCCAGUC-GCGG--------------CG---UCGUAaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 62747 1.08 0.000691
Target:  5'- gCGGUCAGCGCCGCAGCAUUCGGCACGu -3'
miRNA:   3'- -GCCAGUCGCGGCGUCGUAAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 62555 0.69 0.429193
Target:  5'- cCGcUCAGCGCCGaAGCAcUUCGG-ACGg -3'
miRNA:   3'- -GCcAGUCGCGGCgUCGU-AAGCCgUGC- -5'
24108 3' -58.5 NC_005262.1 + 61785 0.68 0.457555
Target:  5'- aCGaagCAGCGCCGUGGCGUggagcaugCGaGCACa -3'
miRNA:   3'- -GCca-GUCGCGGCGUCGUAa-------GC-CGUGc -5'
24108 3' -58.5 NC_005262.1 + 60126 0.73 0.23782
Target:  5'- aGGgcgcCAGCGUCGCGGCGaa-GGCAUGg -3'
miRNA:   3'- gCCa---GUCGCGGCGUCGUaagCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 59654 0.67 0.506931
Target:  5'- aCGGcgccacgCGGCGCCGUuuuuuuaugcccGGCuUUCGcGCGCGg -3'
miRNA:   3'- -GCCa------GUCGCGGCG------------UCGuAAGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 59210 0.68 0.487882
Target:  5'- gCGGgcgcucacgcccgagCAGCGCCGCcGC---UGGCGCGa -3'
miRNA:   3'- -GCCa--------------GUCGCGGCGuCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 58947 0.7 0.365583
Target:  5'- uCGGUCGGCG-CGCAGCAgucgaaccagcCGGC-CGc -3'
miRNA:   3'- -GCCAGUCGCgGCGUCGUaa---------GCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 58808 0.73 0.240232
Target:  5'- aCGuGaUCGGCGCCGUgaaGGCAUggcugcugcggcgcuUCGGCACGc -3'
miRNA:   3'- -GC-C-AGUCGCGGCG---UCGUA---------------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 58665 0.69 0.419972
Target:  5'- aGGaUCAGCGCCGC--CcgUCGcGCAUGg -3'
miRNA:   3'- gCC-AGUCGCGGCGucGuaAGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 56600 0.68 0.473085
Target:  5'- cCGGUCuuacaaugcaaucGCGCCGCAauuacGCGguagCGGCAUGc -3'
miRNA:   3'- -GCCAGu------------CGCGGCGU-----CGUaa--GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 56083 0.77 0.13367
Target:  5'- gCGGUCAGCGCaagauGCAGCucgaggaggCGGCGCa -3'
miRNA:   3'- -GCCAGUCGCGg----CGUCGuaa------GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 55966 0.71 0.297113
Target:  5'- uGGUCA-CGCCGgAGcCGUUCGGCuACa -3'
miRNA:   3'- gCCAGUcGCGGCgUC-GUAAGCCG-UGc -5'
24108 3' -58.5 NC_005262.1 + 54296 0.71 0.307306
Target:  5'- gCGGUCGG-GCCGCAaaucgcaccagugguGCGgaaUCGGCACc -3'
miRNA:   3'- -GCCAGUCgCGGCGU---------------CGUa--AGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 53455 0.67 0.54696
Target:  5'- gCGGcgcCGGCGUCGaggacaaCGGCGUgaaguggcUCGGCACGg -3'
miRNA:   3'- -GCCa--GUCGCGGC-------GUCGUA--------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 53004 0.66 0.575252
Target:  5'- gCGG-CAGCuCgCGCAGCAguaccgcgcgccCGGCGCGg -3'
miRNA:   3'- -GCCaGUCGcG-GCGUCGUaa----------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 52388 0.68 0.438533
Target:  5'- gCGGccCGGCGCggCGCGGC-UUCGGCGUGg -3'
miRNA:   3'- -GCCa-GUCGCG--GCGUCGuAAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 52140 0.66 0.590056
Target:  5'- cCGGcCAGCG-UGCAGCGcgacgcCGGCGCc -3'
miRNA:   3'- -GCCaGUCGCgGCGUCGUaa----GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 50940 0.67 0.517084
Target:  5'- aCGG-CAGCGCga-AGC--UCGGCACGa -3'
miRNA:   3'- -GCCaGUCGCGgcgUCGuaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 50846 0.66 0.588996
Target:  5'- cCGGUCGGCgauGCCGUcGCGcacgcccUUCaGCGCGc -3'
miRNA:   3'- -GCCAGUCG---CGGCGuCGU-------AAGcCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.