Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24108 | 3' | -58.5 | NC_005262.1 | + | 50740 | 0.66 | 0.600673 |
Target: 5'- cCGGUCaAGCcacaaucgGCCGCAGCucgaCGcGCACc -3' miRNA: 3'- -GCCAG-UCG--------CGGCGUCGuaa-GC-CGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 23228 | 0.67 | 0.517084 |
Target: 5'- aCGGUCgcGGCaccGCCGguGUugccCGGCGCGu -3' miRNA: 3'- -GCCAG--UCG---CGGCguCGuaa-GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 19528 | 0.67 | 0.517084 |
Target: 5'- gCGGUCAGaaaauCGCgCGuCAGCcagUGGCGCGa -3' miRNA: 3'- -GCCAGUC-----GCG-GC-GUCGuaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 11902 | 0.8 | 0.081616 |
Target: 5'- gCGGUCGGUGCCGUucGGCGgcgUCGGCuCGg -3' miRNA: 3'- -GCCAGUCGCGGCG--UCGUa--AGCCGuGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 52140 | 0.66 | 0.590056 |
Target: 5'- cCGGcCAGCG-UGCAGCGcgacgcCGGCGCc -3' miRNA: 3'- -GCCaGUCGCgGCGUCGUaa----GCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 12502 | 0.66 | 0.590056 |
Target: 5'- uGGUCgAGCGgcaugCGCAGCAgccggCGGC-CGg -3' miRNA: 3'- gCCAG-UCGCg----GCGUCGUaa---GCCGuGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 33320 | 0.66 | 0.588996 |
Target: 5'- aGGauuUCGGCGCCGUcgauguuGGCGUUcucCGGCuucGCGg -3' miRNA: 3'- gCC---AGUCGCGGCG-------UCGUAA---GCCG---UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 46115 | 0.66 | 0.579474 |
Target: 5'- aCGGcCGGCuucuucGCCGCuuccAGC--UCGGCGCGc -3' miRNA: 3'- -GCCaGUCG------CGGCG----UCGuaAGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 20094 | 0.66 | 0.558438 |
Target: 5'- uCGGUgAGCGCguCGCcGCGcgaaUUCGGCcCGg -3' miRNA: 3'- -GCCAgUCGCG--GCGuCGU----AAGCCGuGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 50940 | 0.67 | 0.517084 |
Target: 5'- aCGG-CAGCGCga-AGC--UCGGCACGa -3' miRNA: 3'- -GCCaGUCGCGgcgUCGuaAGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 2776 | 0.67 | 0.527317 |
Target: 5'- gCGGUUAGCagacgucucgGCgaGCGGCuugaugacggUCGGCACGg -3' miRNA: 3'- -GCCAGUCG----------CGg-CGUCGua--------AGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 46907 | 0.66 | 0.568932 |
Target: 5'- gCGGUgCGGUGUggUGCGGCc--CGGCGCGc -3' miRNA: 3'- -GCCA-GUCGCG--GCGUCGuaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 48303 | 0.66 | 0.600673 |
Target: 5'- cCGGUgAGCgaGCCGCcGCGcUCGGUguaaGCGc -3' miRNA: 3'- -GCCAgUCG--CGGCGuCGUaAGCCG----UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 5084 | 0.67 | 0.527317 |
Target: 5'- gCGGUCAGCgccucgggcauGCCGcCAGCuugUUGcGCGCu -3' miRNA: 3'- -GCCAGUCG-----------CGGC-GUCGua-AGC-CGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 16083 | 0.66 | 0.600673 |
Target: 5'- aGG-CGGCgaGCCGCcGCc--CGGCGCGg -3' miRNA: 3'- gCCaGUCG--CGGCGuCGuaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 53004 | 0.66 | 0.575252 |
Target: 5'- gCGG-CAGCuCgCGCAGCAguaccgcgcgccCGGCGCGg -3' miRNA: 3'- -GCCaGUCGcG-GCGUCGUaa----------GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 39590 | 0.67 | 0.517084 |
Target: 5'- cCGGcgCAGCGUCGCGGCugccgccUCGG-GCGu -3' miRNA: 3'- -GCCa-GUCGCGGCGUCGua-----AGCCgUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 13722 | 0.67 | 0.517084 |
Target: 5'- uCGGUCGGCGCaGCGGCcUUCGuCucCGg -3' miRNA: 3'- -GCCAGUCGCGgCGUCGuAAGCcGu-GC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 1999 | 0.66 | 0.59961 |
Target: 5'- aGG-CAuGCGCCGCGcaggcgaaaacgcGCuggucggUCGGCGCGu -3' miRNA: 3'- gCCaGU-CGCGGCGU-------------CGua-----AGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 50846 | 0.66 | 0.588996 |
Target: 5'- cCGGUCGGCgauGCCGUcGCGcacgcccUUCaGCGCGc -3' miRNA: 3'- -GCCAGUCG---CGGCGuCGU-------AAGcCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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