miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 5' -54.6 NC_005262.1 + 62791 1.08 0.001452
Target:  5'- aUUCGCGCCGAAAGCGGAAAUCCCGACg -3'
miRNA:   3'- -AAGCGCGGCUUUCGCCUUUAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 15089 0.74 0.336873
Target:  5'- cUCGgGCCGGAGGCaacucGAAA-CCCGACg -3'
miRNA:   3'- aAGCgCGGCUUUCGc----CUUUaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 50822 0.73 0.353519
Target:  5'- cUUCGCGCCGGAGaCGGGcAcgCUCGGCa -3'
miRNA:   3'- -AAGCGCGGCUUUcGCCU-UuaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 58982 0.73 0.387618
Target:  5'- gUCGCGCCGGcgaaaccagcgcuAcGCGGccggcuccGAUCCCGACa -3'
miRNA:   3'- aAGCGCGGCU-------------UuCGCCu-------UUAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 15042 0.72 0.406854
Target:  5'- gUUCGCGCCGAccuucaGGuucuUCCCGACa -3'
miRNA:   3'- -AAGCGCGGCUuucg--CCuuu-AGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 47380 0.72 0.435347
Target:  5'- cUUGCGCCuc--GCGGcgcaGAAUCCCGGCg -3'
miRNA:   3'- aAGCGCGGcuuuCGCC----UUUAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 62661 0.71 0.445098
Target:  5'- --aGCGUCGggGGUGGGuuuaguccgCCCGGCg -3'
miRNA:   3'- aagCGCGGCuuUCGCCUuua------GGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 60137 0.71 0.46496
Target:  5'- gUCGCGgCGAAGGCaugggcGAAGUaCCCGGCc -3'
miRNA:   3'- aAGCGCgGCUUUCGc-----CUUUA-GGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 48397 0.71 0.475062
Target:  5'- -cCGCGCCucgcuGAAGCGcggcGAAAUCCCGAa -3'
miRNA:   3'- aaGCGCGGc----UUUCGC----CUUUAGGGCUg -5'
24108 5' -54.6 NC_005262.1 + 25938 0.71 0.485273
Target:  5'- -gCGCGCCGAu-GCaGGGAAUCCacCGAUg -3'
miRNA:   3'- aaGCGCGGCUuuCG-CCUUUAGG--GCUG- -5'
24108 5' -54.6 NC_005262.1 + 46445 0.7 0.505999
Target:  5'- aUCGCGUCGAucuucucGCGGAucgCCgCGACg -3'
miRNA:   3'- aAGCGCGGCUuu-----CGCCUuuaGG-GCUG- -5'
24108 5' -54.6 NC_005262.1 + 47747 0.7 0.516504
Target:  5'- -gCGcCGCCGGccGCGGcGAaCCCGGCa -3'
miRNA:   3'- aaGC-GCGGCUuuCGCCuUUaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 17670 0.7 0.527096
Target:  5'- -gCGCGCCGAgcuggAAGCGGcgaAGAagCCGGCc -3'
miRNA:   3'- aaGCGCGGCU-----UUCGCC---UUUagGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 25005 0.7 0.527096
Target:  5'- cUCGCGCCGugcAGCGcauGAUCUCGAa -3'
miRNA:   3'- aAGCGCGGCuu-UCGCcu-UUAGGGCUg -5'
24108 5' -54.6 NC_005262.1 + 19196 0.69 0.559324
Target:  5'- cUCGCGCUc-GAGCGGAA-UCUCGAa -3'
miRNA:   3'- aAGCGCGGcuUUCGCCUUuAGGGCUg -5'
24108 5' -54.6 NC_005262.1 + 5022 0.69 0.559324
Target:  5'- --aGCGCCGGAAcGCGGAGGgugCCUG-Cu -3'
miRNA:   3'- aagCGCGGCUUU-CGCCUUUa--GGGCuG- -5'
24108 5' -54.6 NC_005262.1 + 13997 0.69 0.614098
Target:  5'- aUCGgGCCGGAcgguGCaGGGGcgUCCGGCg -3'
miRNA:   3'- aAGCgCGGCUUu---CG-CCUUuaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 33928 0.68 0.625136
Target:  5'- --gGUGCCGAGcucgcGGCGGGcacgcggcaagcGAUCCCGGa -3'
miRNA:   3'- aagCGCGGCUU-----UCGCCU------------UUAGGGCUg -5'
24108 5' -54.6 NC_005262.1 + 35235 0.68 0.625136
Target:  5'- gUCGCGCgCGc-GGCGGAAGcCCCaGAUa -3'
miRNA:   3'- aAGCGCG-GCuuUCGCCUUUaGGG-CUG- -5'
24108 5' -54.6 NC_005262.1 + 9145 0.68 0.636181
Target:  5'- -cCGgGCCGGucggaauGCGGAucaCCCGGCg -3'
miRNA:   3'- aaGCgCGGCUuu-----CGCCUuuaGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.