miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 5' -54.6 NC_005262.1 + 22487 0.66 0.765348
Target:  5'- --aGCGCUGAagcuggcgcgcGAGCGGAucgcgaagcggcAGUCCCGcuACa -3'
miRNA:   3'- aagCGCGGCU-----------UUCGCCU------------UUAGGGC--UG- -5'
24108 5' -54.6 NC_005262.1 + 40559 0.68 0.657147
Target:  5'- -aCGCGCCGGGcaacaccGGCGGug--CCgCGACc -3'
miRNA:   3'- aaGCGCGGCUU-------UCGCCuuuaGG-GCUG- -5'
24108 5' -54.6 NC_005262.1 + 36474 0.68 0.669251
Target:  5'- -gCGCGCgCGAGgcuGGCGGAcAUCgCGAa -3'
miRNA:   3'- aaGCGCG-GCUU---UCGCCUuUAGgGCUg -5'
24108 5' -54.6 NC_005262.1 + 17017 0.67 0.680219
Target:  5'- gUCGUGCUGAAgucgaccgaGGCGGAAAagcagcUCCgCGAg -3'
miRNA:   3'- aAGCGCGGCUU---------UCGCCUUU------AGG-GCUg -5'
24108 5' -54.6 NC_005262.1 + 17548 0.67 0.7128
Target:  5'- gUCGCGCgCG-AGGCGGcag-CCgCGGCg -3'
miRNA:   3'- aAGCGCG-GCuUUCGCCuuuaGG-GCUG- -5'
24108 5' -54.6 NC_005262.1 + 5207 0.67 0.723516
Target:  5'- -gCGCGaCCGAGGGCGu--AUCCUGcACg -3'
miRNA:   3'- aaGCGC-GGCUUUCGCcuuUAGGGC-UG- -5'
24108 5' -54.6 NC_005262.1 + 34584 0.66 0.744662
Target:  5'- -gCGCGCCGu--GCGGcgccguGAUCCaCGAg -3'
miRNA:   3'- aaGCGCGGCuuuCGCCu-----UUAGG-GCUg -5'
24108 5' -54.6 NC_005262.1 + 5892 0.66 0.744662
Target:  5'- aUCGaCGUCGAugucGGGCGGGAGcgccuUCUCGAUc -3'
miRNA:   3'- aAGC-GCGGCU----UUCGCCUUU-----AGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 40591 0.66 0.755068
Target:  5'- gUCGCGCUGAcGGUGGcgcAGAUgCCGcaGCa -3'
miRNA:   3'- aAGCGCGGCUuUCGCC---UUUAgGGC--UG- -5'
24108 5' -54.6 NC_005262.1 + 50702 0.68 0.647222
Target:  5'- cUCGCGCgaGAAGGCGcAGAccuUCCuCGACa -3'
miRNA:   3'- aAGCGCGg-CUUUCGCcUUU---AGG-GCUG- -5'
24108 5' -54.6 NC_005262.1 + 2663 0.68 0.647222
Target:  5'- --gGCGCCG--GGCGGc-GUCCUGGCc -3'
miRNA:   3'- aagCGCGGCuuUCGCCuuUAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 9145 0.68 0.636181
Target:  5'- -cCGgGCCGGucggaauGCGGAucaCCCGGCg -3'
miRNA:   3'- aaGCgCGGCUuu-----CGCCUuuaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 15089 0.74 0.336873
Target:  5'- cUCGgGCCGGAGGCaacucGAAA-CCCGACg -3'
miRNA:   3'- aAGCgCGGCUUUCGc----CUUUaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 50822 0.73 0.353519
Target:  5'- cUUCGCGCCGGAGaCGGGcAcgCUCGGCa -3'
miRNA:   3'- -AAGCGCGGCUUUcGCCU-UuaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 62661 0.71 0.445098
Target:  5'- --aGCGUCGggGGUGGGuuuaguccgCCCGGCg -3'
miRNA:   3'- aagCGCGGCuuUCGCCUuua------GGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 60137 0.71 0.46496
Target:  5'- gUCGCGgCGAAGGCaugggcGAAGUaCCCGGCc -3'
miRNA:   3'- aAGCGCgGCUUUCGc-----CUUUA-GGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 48397 0.71 0.475062
Target:  5'- -cCGCGCCucgcuGAAGCGcggcGAAAUCCCGAa -3'
miRNA:   3'- aaGCGCGGc----UUUCGC----CUUUAGGGCUg -5'
24108 5' -54.6 NC_005262.1 + 47747 0.7 0.516504
Target:  5'- -gCGcCGCCGGccGCGGcGAaCCCGGCa -3'
miRNA:   3'- aaGC-GCGGCUuuCGCCuUUaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 17670 0.7 0.527096
Target:  5'- -gCGCGCCGAgcuggAAGCGGcgaAGAagCCGGCc -3'
miRNA:   3'- aaGCGCGGCU-----UUCGCC---UUUagGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 33928 0.68 0.625136
Target:  5'- --gGUGCCGAGcucgcGGCGGGcacgcggcaagcGAUCCCGGa -3'
miRNA:   3'- aagCGCGGCUU-----UCGCCU------------UUAGGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.