miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 5' -54.6 NC_005262.1 + 2663 0.68 0.647222
Target:  5'- --gGCGCCG--GGCGGc-GUCCUGGCc -3'
miRNA:   3'- aagCGCGGCuuUCGCCuuUAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 2868 0.67 0.723516
Target:  5'- -aCGCGCCGuucAGCGGGAAguaggCgUCGAUg -3'
miRNA:   3'- aaGCGCGGCuu-UCGCCUUUa----G-GGCUG- -5'
24108 5' -54.6 NC_005262.1 + 4815 0.67 0.723516
Target:  5'- --gGCGCgGGAGGCGuGAGGcCgCCGGCg -3'
miRNA:   3'- aagCGCGgCUUUCGC-CUUUaG-GGCUG- -5'
24108 5' -54.6 NC_005262.1 + 5022 0.69 0.559324
Target:  5'- --aGCGCCGGAAcGCGGAGGgugCCUG-Cu -3'
miRNA:   3'- aagCGCGGCUUU-CGCCUUUa--GGGCuG- -5'
24108 5' -54.6 NC_005262.1 + 5207 0.67 0.723516
Target:  5'- -gCGCGaCCGAGGGCGu--AUCCUGcACg -3'
miRNA:   3'- aaGCGC-GGCUUUCGCcuuUAGGGC-UG- -5'
24108 5' -54.6 NC_005262.1 + 5892 0.66 0.744662
Target:  5'- aUCGaCGUCGAugucGGGCGGGAGcgccuUCUCGAUc -3'
miRNA:   3'- aAGC-GCGGCU----UUCGCCUUU-----AGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 8148 0.67 0.726713
Target:  5'- -gCGUGCCGGAcGCGGccacgagcgcgcggCCCGGCu -3'
miRNA:   3'- aaGCGCGGCUUuCGCCuuua----------GGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 9145 0.68 0.636181
Target:  5'- -cCGgGCCGGucggaauGCGGAucaCCCGGCg -3'
miRNA:   3'- aaGCgCGGCUuu-----CGCCUuuaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 10670 0.67 0.73414
Target:  5'- cUCGCGCgGcAucGCGGuuuucgugAAGUCgCCGACg -3'
miRNA:   3'- aAGCGCGgC-UuuCGCC--------UUUAG-GGCUG- -5'
24108 5' -54.6 NC_005262.1 + 12251 0.66 0.765348
Target:  5'- gUCGCGUCGAuGGuCGGGcaccugucGAUCgCGGCc -3'
miRNA:   3'- aAGCGCGGCUuUC-GCCU--------UUAGgGCUG- -5'
24108 5' -54.6 NC_005262.1 + 13540 0.66 0.785483
Target:  5'- -gCGCGCCcucguugcGGCGGucGAUCUCGGCc -3'
miRNA:   3'- aaGCGCGGcuu-----UCGCCu-UUAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 13997 0.69 0.614098
Target:  5'- aUCGgGCCGGAcgguGCaGGGGcgUCCGGCg -3'
miRNA:   3'- aAGCgCGGCUUu---CG-CCUUuaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 15042 0.72 0.406854
Target:  5'- gUUCGCGCCGAccuucaGGuucuUCCCGACa -3'
miRNA:   3'- -AAGCGCGGCUuucg--CCuuu-AGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 15089 0.74 0.336873
Target:  5'- cUCGgGCCGGAGGCaacucGAAA-CCCGACg -3'
miRNA:   3'- aAGCgCGGCUUUCGc----CUUUaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 17017 0.67 0.680219
Target:  5'- gUCGUGCUGAAgucgaccgaGGCGGAAAagcagcUCCgCGAg -3'
miRNA:   3'- aAGCGCGGCUU---------UCGCCUUU------AGG-GCUg -5'
24108 5' -54.6 NC_005262.1 + 17184 0.66 0.765348
Target:  5'- aUCGCGUCG--GGCGGGAucuguggcGUCUgCGGCg -3'
miRNA:   3'- aAGCGCGGCuuUCGCCUU--------UAGG-GCUG- -5'
24108 5' -54.6 NC_005262.1 + 17548 0.67 0.7128
Target:  5'- gUCGCGCgCG-AGGCGGcag-CCgCGGCg -3'
miRNA:   3'- aAGCGCG-GCuUUCGCCuuuaGG-GCUG- -5'
24108 5' -54.6 NC_005262.1 + 17670 0.7 0.527096
Target:  5'- -gCGCGCCGAgcuggAAGCGGcgaAGAagCCGGCc -3'
miRNA:   3'- aaGCGCGGCU-----UUCGCC---UUUagGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 19196 0.69 0.559324
Target:  5'- cUCGCGCUc-GAGCGGAA-UCUCGAa -3'
miRNA:   3'- aAGCGCGGcuUUCGCCUUuAGGGCUg -5'
24108 5' -54.6 NC_005262.1 + 19654 0.66 0.755068
Target:  5'- aUCGCgcgcgcguccgGCCGGAAcGCGGGAAcgCCGAUg -3'
miRNA:   3'- aAGCG-----------CGGCUUU-CGCCUUUagGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.