Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24114 | 5' | -61.1 | NC_005263.2 | + | 14102 | 0.67 | 0.302299 |
Target: 5'- -aCCGGCUGCGCGGCgGUcgCCGucGCg -3' miRNA: 3'- aaGGCUGGCGCGUCG-CGuaGGUccCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 2797 | 0.67 | 0.302299 |
Target: 5'- --gCGAUUGCGCAGCGCGUCauacGCg -3' miRNA: 3'- aagGCUGGCGCGUCGCGUAGguccCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 2354 | 0.67 | 0.297897 |
Target: 5'- cUUCCGccagcgcagGCCGUGCcaacccucagcaccgAGCgGCAggCCGGGGCa -3' miRNA: 3'- -AAGGC---------UGGCGCG---------------UCG-CGUa-GGUCCCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 17492 | 0.67 | 0.29499 |
Target: 5'- -cCUGAUCGCGCgcGGCGCGUCgaucgaucaggCGGcGGCu -3' miRNA: 3'- aaGGCUGGCGCG--UCGCGUAG-----------GUC-CCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 28787 | 0.67 | 0.29499 |
Target: 5'- cUCCuGGuuGCcuuGCGCAUCCGGGcGCg -3' miRNA: 3'- aAGG-CUggCGcguCGCGUAGGUCC-CG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 13287 | 0.67 | 0.28782 |
Target: 5'- -aCCGACUgGCGCGuGCGCAgCCAGuugucgauguacGGCa -3' miRNA: 3'- aaGGCUGG-CGCGU-CGCGUaGGUC------------CCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 32465 | 0.67 | 0.28782 |
Target: 5'- --aCGAUCGCGUagaucggcgucGGCGCAUUCAGcgacGGCa -3' miRNA: 3'- aagGCUGGCGCG-----------UCGCGUAGGUC----CCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 29457 | 0.67 | 0.28782 |
Target: 5'- aUUCG-CCG-GCAGCGUAccgCCAGcGGCg -3' miRNA: 3'- aAGGCuGGCgCGUCGCGUa--GGUC-CCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 35528 | 0.68 | 0.280787 |
Target: 5'- -gCCGACUGCGCccggcGGCGCG-CgGgcGGGCg -3' miRNA: 3'- aaGGCUGGCGCG-----UCGCGUaGgU--CCCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 24808 | 0.68 | 0.267133 |
Target: 5'- -cCUGGCCGCcguaaaaCGGCGCcuguccCCAGGGCu -3' miRNA: 3'- aaGGCUGGCGc------GUCGCGua----GGUCCCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 30357 | 0.68 | 0.267133 |
Target: 5'- -gCCGAucaggucgUCGUGCAGCGC-UUCGGGGa -3' miRNA: 3'- aaGGCU--------GGCGCGUCGCGuAGGUCCCg -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 25982 | 0.68 | 0.267133 |
Target: 5'- gUCCGGCgauCGCGCuuGCaGCGUgCCGGcGGCa -3' miRNA: 3'- aAGGCUG---GCGCGu-CG-CGUA-GGUC-CCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 45719 | 0.68 | 0.267133 |
Target: 5'- --gCGACCGC-CGGCGCcgUCAuGGGUu -3' miRNA: 3'- aagGCUGGCGcGUCGCGuaGGU-CCCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 46818 | 0.68 | 0.266465 |
Target: 5'- -gCCGAUCGCGUAacgcaacGCGCG-CCAGGcgGCg -3' miRNA: 3'- aaGGCUGGCGCGU-------CGCGUaGGUCC--CG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 535 | 0.68 | 0.26051 |
Target: 5'- gUUCGACuCGaCGUAGCcuuGCAcgUUCAGGGCg -3' miRNA: 3'- aAGGCUG-GC-GCGUCG---CGU--AGGUCCCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 9546 | 0.68 | 0.247665 |
Target: 5'- --gCGACCGaCGCGGCGCucgcggcuugCCAGGcgGCg -3' miRNA: 3'- aagGCUGGC-GCGUCGCGua--------GGUCC--CG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 24092 | 0.68 | 0.247665 |
Target: 5'- aUCCGGCCG-GCGGCGgCuacgugCC-GGGCu -3' miRNA: 3'- aAGGCUGGCgCGUCGC-Gua----GGuCCCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 10398 | 0.68 | 0.247665 |
Target: 5'- -gCCGGCCG-GCgAGCGgGUCCGGcGCg -3' miRNA: 3'- aaGGCUGGCgCG-UCGCgUAGGUCcCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 30612 | 0.69 | 0.241441 |
Target: 5'- -aUCGAUCGaCGCGccgcGCGCGaUCAGGGCg -3' miRNA: 3'- aaGGCUGGC-GCGU----CGCGUaGGUCCCG- -5' |
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24114 | 5' | -61.1 | NC_005263.2 | + | 17371 | 0.69 | 0.240826 |
Target: 5'- aUCCGaACCGCGUgaagcugucugccGGCGCggCCGcgcgccuggcGGGCg -3' miRNA: 3'- aAGGC-UGGCGCG-------------UCGCGuaGGU----------CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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