miRNA display CGI


Results 41 - 60 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 19171 0.72 0.203674
Target:  5'- cCGCCGGCGcGGCuCGuc-GGCCGCGCGu -3'
miRNA:   3'- -GCGGCCGU-UCGcGCuacUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 34894 0.72 0.203674
Target:  5'- gCGCaGGCGcucacgccuGGCGCGAaugucgaccugUGAugCGCGCGg -3'
miRNA:   3'- -GCGgCCGU---------UCGCGCU-----------ACUugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 44580 0.72 0.209054
Target:  5'- aCGCCGGCcgcGAGaCGCuGAaGAagauuGCCGCGCGc -3'
miRNA:   3'- -GCGGCCG---UUC-GCG-CUaCU-----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19319 0.72 0.214002
Target:  5'- cCGCCGGCu-GUGCGGUGGucgaugucgaaguACuCGCGCc -3'
miRNA:   3'- -GCGGCCGuuCGCGCUACU-------------UG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 10661 0.72 0.214558
Target:  5'- aCGCCGcGCAGaccGCGCGcgccgacguAUGAcgacgaggacgGCCGCGCGa -3'
miRNA:   3'- -GCGGC-CGUU---CGCGC---------UACU-----------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 26197 0.72 0.214558
Target:  5'- cCGCgCGGCGGccGCGCGAUGcggcGGCCGUucGCGa -3'
miRNA:   3'- -GCG-GCCGUU--CGCGCUAC----UUGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 28804 0.72 0.220184
Target:  5'- aGCCGGCGGGcCGCGuuuccaaGAACuCGcCGCGa -3'
miRNA:   3'- gCGGCCGUUC-GCGCua-----CUUG-GC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 14171 0.72 0.220184
Target:  5'- gGCCGGCGgccGGUGUGcgcGAGCUGCGUGc -3'
miRNA:   3'- gCGGCCGU---UCGCGCua-CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 43672 0.72 0.220184
Target:  5'- gGCCGGCGgacaacAGCGCGGauUGGGCCGgGa- -3'
miRNA:   3'- gCGGCCGU------UCGCGCU--ACUUGGCgCgc -5'
24116 3' -59.1 NC_005263.2 + 21329 0.71 0.224198
Target:  5'- aCGCCGucggucugauguucGCGAGCGCGcugaAUGAACgUGCGCa -3'
miRNA:   3'- -GCGGC--------------CGUUCGCGC----UACUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 35568 0.71 0.225356
Target:  5'- cCGCCGGCcgcCGCGAacgUGAAugcgaacgccaacCCGCGCGa -3'
miRNA:   3'- -GCGGCCGuucGCGCU---ACUU-------------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 43087 0.71 0.225937
Target:  5'- gGCCGGCugucGAGCGCGGcgGAaggcACCGUGUc -3'
miRNA:   3'- gCGGCCG----UUCGCGCUa-CU----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 40250 0.71 0.225937
Target:  5'- gGCgGGCAccuggGGCGCGGUGAucuuCCGCccguucGCGg -3'
miRNA:   3'- gCGgCCGU-----UCGCGCUACUu---GGCG------CGC- -5'
24116 3' -59.1 NC_005263.2 + 6616 0.71 0.225937
Target:  5'- uCGgCGGCGcgcucGGCGCGGUcGAGCaguCGCGCGu -3'
miRNA:   3'- -GCgGCCGU-----UCGCGCUA-CUUG---GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 35419 0.71 0.225937
Target:  5'- aCGCCGGCAAGCucgacGCGAacgacGACCccgGCGCGc -3'
miRNA:   3'- -GCGGCCGUUCG-----CGCUac---UUGG---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 27954 0.71 0.225937
Target:  5'- aGCCGGacGGCGCgGAUGGcccagagcuGCUGCGCGc -3'
miRNA:   3'- gCGGCCguUCGCG-CUACU---------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1638 0.71 0.231222
Target:  5'- uCGUCGGC-GGCGUagcccugGAUGcGCUGCGCGg -3'
miRNA:   3'- -GCGGCCGuUCGCG-------CUACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3308 0.71 0.237217
Target:  5'- gCGCgCGGCGGcGCGCGGUuGAAuuaaacuaucgcuUCGCGCGa -3'
miRNA:   3'- -GCG-GCCGUU-CGCGCUA-CUU-------------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 44020 0.71 0.237824
Target:  5'- cCGCuCGGCAAGgGUGgcGAcuucGCCGCGUu -3'
miRNA:   3'- -GCG-GCCGUUCgCGCuaCU----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 37939 0.71 0.238431
Target:  5'- cCGCCGGCAgccGGUGCGcaaccggccgauGCCGCGCc -3'
miRNA:   3'- -GCGGCCGU---UCGCGCuacu--------UGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.