miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24117 5' -56.6 NC_005263.2 + 189 0.7 0.333177
Target:  5'- -gCCCGCUgcccgUGCGCC---CGGCCGCu -3'
miRNA:   3'- uaGGGCGAa----AUGCGGcuaGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 3225 0.66 0.557053
Target:  5'- -gCCCGCcccgaugACGCCGggCAGCaucuGCAc -3'
miRNA:   3'- uaGGGCGaaa----UGCGGCuaGUCGg---CGU- -5'
24117 5' -56.6 NC_005263.2 + 4846 0.67 0.483399
Target:  5'- -gCCCGCacagccaaucgagcgUUACGCCGAgcgcgUCAGCCaaucGCAa -3'
miRNA:   3'- uaGGGCGa--------------AAUGCGGCU-----AGUCGG----CGU- -5'
24117 5' -56.6 NC_005263.2 + 7312 0.68 0.472076
Target:  5'- gGUCUgCGCgaUGCGCuCGAUCAGCauCGCGu -3'
miRNA:   3'- -UAGG-GCGaaAUGCG-GCUAGUCG--GCGU- -5'
24117 5' -56.6 NC_005263.2 + 7403 0.7 0.333177
Target:  5'- --gUCGCgagUGCGCCGAacaguucgUCGGCCGCu -3'
miRNA:   3'- uagGGCGaa-AUGCGGCU--------AGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 9415 0.67 0.513849
Target:  5'- uAUCgCgGCUgcgGCGCUG-UUAGCCGCGc -3'
miRNA:   3'- -UAG-GgCGAaa-UGCGGCuAGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 12328 0.67 0.492759
Target:  5'- -aCCUGCUcUgcuauggcACGCCGc-CAGCCGCAg -3'
miRNA:   3'- uaGGGCGAaA--------UGCGGCuaGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 15342 0.66 0.579055
Target:  5'- --aUCGaCUUUGCGUCGGUCGcauugcGCCGCGc -3'
miRNA:   3'- uagGGC-GAAAUGCGGCUAGU------CGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 15888 0.74 0.198185
Target:  5'- -aCCCGCUgcagcuuuacACGCUGAUCucGCCGCAg -3'
miRNA:   3'- uaGGGCGAaa--------UGCGGCUAGu-CGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 16486 0.66 0.535298
Target:  5'- --aCgGCgcUGCGCCGcgCGGCCGUc -3'
miRNA:   3'- uagGgCGaaAUGCGGCuaGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 17186 0.67 0.482364
Target:  5'- -gCUCGCggcgUACGCCG-UC-GCCGCGc -3'
miRNA:   3'- uaGGGCGaa--AUGCGGCuAGuCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 17741 0.66 0.579055
Target:  5'- -gCUCGCacucgGCGCCGGcggcagcgCGGCCGCGc -3'
miRNA:   3'- uaGGGCGaaa--UGCGGCUa-------GUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 17901 0.67 0.482364
Target:  5'- -aCCgGCggcGCGCCGAUCAGCauCAa -3'
miRNA:   3'- uaGGgCGaaaUGCGGCUAGUCGgcGU- -5'
24117 5' -56.6 NC_005263.2 + 18443 0.66 0.557053
Target:  5'- --aCCGCUcgaggUGCGCgUGAagCAGCCGCGc -3'
miRNA:   3'- uagGGCGAa----AUGCG-GCUa-GUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 18581 0.66 0.566927
Target:  5'- cGUCCCggccacuGCUggcGCGCCGA-CGgacGCCGCAg -3'
miRNA:   3'- -UAGGG-------CGAaa-UGCGGCUaGU---CGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 19053 0.66 0.546141
Target:  5'- -cCCCGaggacGCGCCGcgCGGCCuGCGc -3'
miRNA:   3'- uaGGGCgaaa-UGCGGCuaGUCGG-CGU- -5'
24117 5' -56.6 NC_005263.2 + 19093 0.69 0.403433
Target:  5'- --gUCGCggUGCgcaacgcacuGCCGGUCGGCCGCGc -3'
miRNA:   3'- uagGGCGaaAUG----------CGGCUAGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 19169 0.68 0.472076
Target:  5'- -aUCCGCcg-GCGCgGcucGUCGGCCGCGc -3'
miRNA:   3'- uaGGGCGaaaUGCGgC---UAGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 21777 0.72 0.251912
Target:  5'- cGUCCCGCaaccgaccUUcACGCCGAcCGGCCuGCAg -3'
miRNA:   3'- -UAGGGCG--------AAaUGCGGCUaGUCGG-CGU- -5'
24117 5' -56.6 NC_005263.2 + 21914 0.73 0.220716
Target:  5'- cAUCgCGCggc-CGCCGcgCGGCCGCAg -3'
miRNA:   3'- -UAGgGCGaaauGCGGCuaGUCGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.