miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24117 5' -56.6 NC_005263.2 + 31330 0.74 0.192874
Target:  5'- cGUCCgGCgaUACGCCGG-CGGCCGUc -3'
miRNA:   3'- -UAGGgCGaaAUGCGGCUaGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 32659 0.66 0.535298
Target:  5'- cUUCCGgaUgGCGCgGGUCGGCgGCGa -3'
miRNA:   3'- uAGGGCgaAaUGCGgCUAGUCGgCGU- -5'
24117 5' -56.6 NC_005263.2 + 3225 0.66 0.557053
Target:  5'- -gCCCGCcccgaugACGCCGggCAGCaucuGCAc -3'
miRNA:   3'- uaGGGCGaaa----UGCGGCuaGUCGg---CGU- -5'
24117 5' -56.6 NC_005263.2 + 37716 0.66 0.579055
Target:  5'- -aCCCGCU---CGCCGGcCGGCCcgGCGc -3'
miRNA:   3'- uaGGGCGAaauGCGGCUaGUCGG--CGU- -5'
24117 5' -56.6 NC_005263.2 + 33835 0.7 0.34145
Target:  5'- uAUCCCaaugcGCgcgUUGCGCCGG-CcGCCGCAa -3'
miRNA:   3'- -UAGGG-----CGa--AAUGCGGCUaGuCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 42861 0.69 0.376008
Target:  5'- -gCCCGCUgaugacgGCGCCuGAUCGcgucaauggcguGCCGCGc -3'
miRNA:   3'- uaGGGCGAaa-----UGCGG-CUAGU------------CGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 44768 0.68 0.422404
Target:  5'- -aCCgCGCgcgGCGCCGG-CGGCgCGCAg -3'
miRNA:   3'- uaGG-GCGaaaUGCGGCUaGUCG-GCGU- -5'
24117 5' -56.6 NC_005263.2 + 26288 0.68 0.454846
Target:  5'- -gCCCGCgagaauggcuugcuCGCCGGcCAGCUGCAg -3'
miRNA:   3'- uaGGGCGaaau----------GCGGCUaGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 19169 0.68 0.472076
Target:  5'- -aUCCGCcg-GCGCgGcucGUCGGCCGCGc -3'
miRNA:   3'- uaGGGCGaaaUGCGgC---UAGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 38176 0.66 0.535298
Target:  5'- uUCgCGUUcgACGCUGAUCcAGCUGCc -3'
miRNA:   3'- uAGgGCGAaaUGCGGCUAG-UCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 38929 0.67 0.492759
Target:  5'- -aCCCGCgucgcuucGCGCUGAUCGGCaCGg- -3'
miRNA:   3'- uaGGGCGaaa-----UGCGGCUAGUCG-GCgu -5'
24117 5' -56.6 NC_005263.2 + 45343 0.68 0.4619
Target:  5'- --gUCGUg--AUGCCGGUCGGUCGCGa -3'
miRNA:   3'- uagGGCGaaaUGCGGCUAGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 21914 0.73 0.220716
Target:  5'- cAUCgCGCggc-CGCCGcgCGGCCGCAg -3'
miRNA:   3'- -UAGgGCGaaauGCGGCuaGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 44631 0.67 0.492759
Target:  5'- -aCUCGCUgcgGCaGCUGAUCgAGCUGCGc -3'
miRNA:   3'- uaGGGCGAaa-UG-CGGCUAG-UCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 22528 0.73 0.23278
Target:  5'- -gCCUGCUcgAUGCCGAgacgGGCCGCAa -3'
miRNA:   3'- uaGGGCGAaaUGCGGCUag--UCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 29508 0.68 0.4619
Target:  5'- -aCCCGCgcaugGCGUCGuucCAGCCGUu -3'
miRNA:   3'- uaGGGCGaaa--UGCGGCua-GUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 9415 0.67 0.513849
Target:  5'- uAUCgCgGCUgcgGCGCUG-UUAGCCGCGc -3'
miRNA:   3'- -UAG-GgCGAaa-UGCGGCuAGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 31715 0.66 0.535298
Target:  5'- -aCCCGCg--AUGCCGGccagcuucaUCAGgCCGCc -3'
miRNA:   3'- uaGGGCGaaaUGCGGCU---------AGUC-GGCGu -5'
24117 5' -56.6 NC_005263.2 + 189 0.7 0.333177
Target:  5'- -gCCCGCUgcccgUGCGCC---CGGCCGCu -3'
miRNA:   3'- uaGGGCGAa----AUGCGGcuaGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 19093 0.69 0.403433
Target:  5'- --gUCGCggUGCgcaacgcacuGCCGGUCGGCCGCGc -3'
miRNA:   3'- uagGGCGaaAUG----------CGGCUAGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.