miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24117 5' -56.6 NC_005263.2 + 21777 0.72 0.251912
Target:  5'- cGUCCCGCaaccgaccUUcACGCCGAcCGGCCuGCAg -3'
miRNA:   3'- -UAGGGCG--------AAaUGCGGCUaGUCGG-CGU- -5'
24117 5' -56.6 NC_005263.2 + 45139 0.68 0.432089
Target:  5'- cAUUCCGCUgacgggcaucACGCuCGcgCAGCUGCAg -3'
miRNA:   3'- -UAGGGCGAaa--------UGCG-GCuaGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 38563 0.68 0.432089
Target:  5'- --gCCGCga-GCGCCGcGUCGGUCGCu -3'
miRNA:   3'- uagGGCGaaaUGCGGC-UAGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 25760 0.68 0.432089
Target:  5'- -gCCCGCgugaucUGCGUCGAgaagCAGcCCGCGc -3'
miRNA:   3'- uaGGGCGaa----AUGCGGCUa---GUC-GGCGU- -5'
24117 5' -56.6 NC_005263.2 + 27695 0.7 0.358438
Target:  5'- -gUgCGCgccgGCGCCGG-CGGCCGCAu -3'
miRNA:   3'- uaGgGCGaaa-UGCGGCUaGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 7403 0.7 0.333177
Target:  5'- --gUCGCgagUGCGCCGAacaguucgUCGGCCGCu -3'
miRNA:   3'- uagGGCGaa-AUGCGGCU--------AGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 40688 0.71 0.317075
Target:  5'- -aCCUGCUcgacGCGCCGAUCucCCGCAu -3'
miRNA:   3'- uaGGGCGAaa--UGCGGCUAGucGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 45261 0.71 0.309247
Target:  5'- ---aCGCUgcgACGCUGAUCgaAGCCGCAu -3'
miRNA:   3'- uaggGCGAaa-UGCGGCUAG--UCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 26999 0.71 0.309247
Target:  5'- -aCCCGCU--GCGCCGGgcUCGucGCCGCc -3'
miRNA:   3'- uaGGGCGAaaUGCGGCU--AGU--CGGCGu -5'
24117 5' -56.6 NC_005263.2 + 27325 0.68 0.4619
Target:  5'- -aCCCGac--GCGCCGAcgaUCAGCgGCGc -3'
miRNA:   3'- uaGGGCgaaaUGCGGCU---AGUCGgCGU- -5'
24117 5' -56.6 NC_005263.2 + 37340 0.68 0.4619
Target:  5'- -aCCgCGCgcagcuuugAUGCCGA-CGGCCGCAu -3'
miRNA:   3'- uaGG-GCGaaa------UGCGGCUaGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 7312 0.68 0.472076
Target:  5'- gGUCUgCGCgaUGCGCuCGAUCAGCauCGCGu -3'
miRNA:   3'- -UAGG-GCGaaAUGCG-GCUAGUCG--GCGU- -5'
24117 5' -56.6 NC_005263.2 + 17741 0.66 0.579055
Target:  5'- -gCUCGCacucgGCGCCGGcggcagcgCGGCCGCGc -3'
miRNA:   3'- uaGGGCGaaa--UGCGGCUa-------GUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 18443 0.66 0.557053
Target:  5'- --aCCGCUcgaggUGCGCgUGAagCAGCCGCGc -3'
miRNA:   3'- uagGGCGAa----AUGCG-GCUa-GUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 19053 0.66 0.546141
Target:  5'- -cCCCGaggacGCGCCGcgCGGCCuGCGc -3'
miRNA:   3'- uaGGGCgaaa-UGCGGCuaGUCGG-CGU- -5'
24117 5' -56.6 NC_005263.2 + 16486 0.66 0.535298
Target:  5'- --aCgGCgcUGCGCCGcgCGGCCGUc -3'
miRNA:   3'- uagGgCGaaAUGCGGCuaGUCGGCGu -5'
24117 5' -56.6 NC_005263.2 + 12328 0.67 0.492759
Target:  5'- -aCCUGCUcUgcuauggcACGCCGc-CAGCCGCAg -3'
miRNA:   3'- uaGGGCGAaA--------UGCGGCuaGUCGGCGU- -5'
24117 5' -56.6 NC_005263.2 + 4846 0.67 0.483399
Target:  5'- -gCCCGCacagccaaucgagcgUUACGCCGAgcgcgUCAGCCaaucGCAa -3'
miRNA:   3'- uaGGGCGa--------------AAUGCGGCU-----AGUCGG----CGU- -5'
24117 5' -56.6 NC_005263.2 + 30294 0.67 0.482364
Target:  5'- -gUCCGCgacaGCGCCGGgcgCGGCCgGCGu -3'
miRNA:   3'- uaGGGCGaaa-UGCGGCUa--GUCGG-CGU- -5'
24117 5' -56.6 NC_005263.2 + 17901 0.67 0.482364
Target:  5'- -aCCgGCggcGCGCCGAUCAGCauCAa -3'
miRNA:   3'- uaGGgCGaaaUGCGGCUAGUCGgcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.