Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24117 | 5' | -56.6 | NC_005263.2 | + | 44582 | 1.07 | 0.000758 |
Target: 5'- gAUCCCGCUUUACGCCGAUCAGCCGCAa -3' miRNA: 3'- -UAGGGCGAAAUGCGGCUAGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 31330 | 0.74 | 0.192874 |
Target: 5'- cGUCCgGCgaUACGCCGG-CGGCCGUc -3' miRNA: 3'- -UAGGgCGaaAUGCGGCUaGUCGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 15888 | 0.74 | 0.198185 |
Target: 5'- -aCCCGCUgcagcuuuacACGCUGAUCucGCCGCAg -3' miRNA: 3'- uaGGGCGAaa--------UGCGGCUAGu-CGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 21914 | 0.73 | 0.220716 |
Target: 5'- cAUCgCGCggc-CGCCGcgCGGCCGCAg -3' miRNA: 3'- -UAGgGCGaaauGCGGCuaGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 22528 | 0.73 | 0.23278 |
Target: 5'- -gCCUGCUcgAUGCCGAgacgGGCCGCAa -3' miRNA: 3'- uaGGGCGAaaUGCGGCUag--UCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 21777 | 0.72 | 0.251912 |
Target: 5'- cGUCCCGCaaccgaccUUcACGCCGAcCGGCCuGCAg -3' miRNA: 3'- -UAGGGCG--------AAaUGCGGCUaGUCGG-CGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 26999 | 0.71 | 0.309247 |
Target: 5'- -aCCCGCU--GCGCCGGgcUCGucGCCGCc -3' miRNA: 3'- uaGGGCGAaaUGCGGCU--AGU--CGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 45261 | 0.71 | 0.309247 |
Target: 5'- ---aCGCUgcgACGCUGAUCgaAGCCGCAu -3' miRNA: 3'- uaggGCGAaa-UGCGGCUAG--UCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 40688 | 0.71 | 0.317075 |
Target: 5'- -aCCUGCUcgacGCGCCGAUCucCCGCAu -3' miRNA: 3'- uaGGGCGAaa--UGCGGCUAGucGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 7403 | 0.7 | 0.333177 |
Target: 5'- --gUCGCgagUGCGCCGAacaguucgUCGGCCGCu -3' miRNA: 3'- uagGGCGaa-AUGCGGCU--------AGUCGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 189 | 0.7 | 0.333177 |
Target: 5'- -gCCCGCUgcccgUGCGCC---CGGCCGCu -3' miRNA: 3'- uaGGGCGAa----AUGCGGcuaGUCGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 33835 | 0.7 | 0.34145 |
Target: 5'- uAUCCCaaugcGCgcgUUGCGCCGG-CcGCCGCAa -3' miRNA: 3'- -UAGGG-----CGa--AAUGCGGCUaGuCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 27695 | 0.7 | 0.358438 |
Target: 5'- -gUgCGCgccgGCGCCGG-CGGCCGCAu -3' miRNA: 3'- uaGgGCGaaa-UGCGGCUaGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 42861 | 0.69 | 0.376008 |
Target: 5'- -gCCCGCUgaugacgGCGCCuGAUCGcgucaauggcguGCCGCGc -3' miRNA: 3'- uaGGGCGAaa-----UGCGG-CUAGU------------CGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 19093 | 0.69 | 0.403433 |
Target: 5'- --gUCGCggUGCgcaacgcacuGCCGGUCGGCCGCGc -3' miRNA: 3'- uagGGCGaaAUG----------CGGCUAGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 44768 | 0.68 | 0.422404 |
Target: 5'- -aCCgCGCgcgGCGCCGG-CGGCgCGCAg -3' miRNA: 3'- uaGG-GCGaaaUGCGGCUaGUCG-GCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 25760 | 0.68 | 0.432089 |
Target: 5'- -gCCCGCgugaucUGCGUCGAgaagCAGcCCGCGc -3' miRNA: 3'- uaGGGCGaa----AUGCGGCUa---GUC-GGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 38563 | 0.68 | 0.432089 |
Target: 5'- --gCCGCga-GCGCCGcGUCGGUCGCu -3' miRNA: 3'- uagGGCGaaaUGCGGC-UAGUCGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 45139 | 0.68 | 0.432089 |
Target: 5'- cAUUCCGCUgacgggcaucACGCuCGcgCAGCUGCAg -3' miRNA: 3'- -UAGGGCGAaa--------UGCG-GCuaGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 26288 | 0.68 | 0.454846 |
Target: 5'- -gCCCGCgagaauggcuugcuCGCCGGcCAGCUGCAg -3' miRNA: 3'- uaGGGCGaaau----------GCGGCUaGUCGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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