Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24117 | 5' | -56.6 | NC_005263.2 | + | 27325 | 0.68 | 0.4619 |
Target: 5'- -aCCCGac--GCGCCGAcgaUCAGCgGCGc -3' miRNA: 3'- uaGGGCgaaaUGCGGCU---AGUCGgCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 29508 | 0.68 | 0.4619 |
Target: 5'- -aCCCGCgcaugGCGUCGuucCAGCCGUu -3' miRNA: 3'- uaGGGCGaaa--UGCGGCua-GUCGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 45343 | 0.68 | 0.4619 |
Target: 5'- --gUCGUg--AUGCCGGUCGGUCGCGa -3' miRNA: 3'- uagGGCGaaaUGCGGCUAGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 37340 | 0.68 | 0.4619 |
Target: 5'- -aCCgCGCgcagcuuugAUGCCGA-CGGCCGCAu -3' miRNA: 3'- uaGG-GCGaaa------UGCGGCUaGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 7312 | 0.68 | 0.472076 |
Target: 5'- gGUCUgCGCgaUGCGCuCGAUCAGCauCGCGu -3' miRNA: 3'- -UAGG-GCGaaAUGCG-GCUAGUCG--GCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 19169 | 0.68 | 0.472076 |
Target: 5'- -aUCCGCcg-GCGCgGcucGUCGGCCGCGc -3' miRNA: 3'- uaGGGCGaaaUGCGgC---UAGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 17186 | 0.67 | 0.482364 |
Target: 5'- -gCUCGCggcgUACGCCG-UC-GCCGCGc -3' miRNA: 3'- uaGGGCGaa--AUGCGGCuAGuCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 17901 | 0.67 | 0.482364 |
Target: 5'- -aCCgGCggcGCGCCGAUCAGCauCAa -3' miRNA: 3'- uaGGgCGaaaUGCGGCUAGUCGgcGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 30294 | 0.67 | 0.482364 |
Target: 5'- -gUCCGCgacaGCGCCGGgcgCGGCCgGCGu -3' miRNA: 3'- uaGGGCGaaa-UGCGGCUa--GUCGG-CGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 4846 | 0.67 | 0.483399 |
Target: 5'- -gCCCGCacagccaaucgagcgUUACGCCGAgcgcgUCAGCCaaucGCAa -3' miRNA: 3'- uaGGGCGa--------------AAUGCGGCU-----AGUCGG----CGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 44631 | 0.67 | 0.492759 |
Target: 5'- -aCUCGCUgcgGCaGCUGAUCgAGCUGCGc -3' miRNA: 3'- uaGGGCGAaa-UG-CGGCUAG-UCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 38929 | 0.67 | 0.492759 |
Target: 5'- -aCCCGCgucgcuucGCGCUGAUCGGCaCGg- -3' miRNA: 3'- uaGGGCGaaa-----UGCGGCUAGUCG-GCgu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 12328 | 0.67 | 0.492759 |
Target: 5'- -aCCUGCUcUgcuauggcACGCCGc-CAGCCGCAg -3' miRNA: 3'- uaGGGCGAaA--------UGCGGCuaGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 9415 | 0.67 | 0.513849 |
Target: 5'- uAUCgCgGCUgcgGCGCUG-UUAGCCGCGc -3' miRNA: 3'- -UAG-GgCGAaa-UGCGGCuAGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 38176 | 0.66 | 0.535298 |
Target: 5'- uUCgCGUUcgACGCUGAUCcAGCUGCc -3' miRNA: 3'- uAGgGCGAaaUGCGGCUAG-UCGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 32659 | 0.66 | 0.535298 |
Target: 5'- cUUCCGgaUgGCGCgGGUCGGCgGCGa -3' miRNA: 3'- uAGGGCgaAaUGCGgCUAGUCGgCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 16486 | 0.66 | 0.535298 |
Target: 5'- --aCgGCgcUGCGCCGcgCGGCCGUc -3' miRNA: 3'- uagGgCGaaAUGCGGCuaGUCGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 31715 | 0.66 | 0.535298 |
Target: 5'- -aCCCGCg--AUGCCGGccagcuucaUCAGgCCGCc -3' miRNA: 3'- uaGGGCGaaaUGCGGCU---------AGUC-GGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 19053 | 0.66 | 0.546141 |
Target: 5'- -cCCCGaggacGCGCCGcgCGGCCuGCGc -3' miRNA: 3'- uaGGGCgaaa-UGCGGCuaGUCGG-CGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 18443 | 0.66 | 0.557053 |
Target: 5'- --aCCGCUcgaggUGCGCgUGAagCAGCCGCGc -3' miRNA: 3'- uagGGCGAa----AUGCG-GCUa-GUCGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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