Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24117 | 5' | -56.6 | NC_005263.2 | + | 37716 | 0.66 | 0.579055 |
Target: 5'- -aCCCGCU---CGCCGGcCGGCCcgGCGc -3' miRNA: 3'- uaGGGCGAaauGCGGCUaGUCGG--CGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 18581 | 0.66 | 0.566927 |
Target: 5'- cGUCCCggccacuGCUggcGCGCCGA-CGgacGCCGCAg -3' miRNA: 3'- -UAGGG-------CGAaa-UGCGGCUaGU---CGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 3225 | 0.66 | 0.557053 |
Target: 5'- -gCCCGCcccgaugACGCCGggCAGCaucuGCAc -3' miRNA: 3'- uaGGGCGaaa----UGCGGCuaGUCGg---CGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 16486 | 0.66 | 0.535298 |
Target: 5'- --aCgGCgcUGCGCCGcgCGGCCGUc -3' miRNA: 3'- uagGgCGaaAUGCGGCuaGUCGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 12328 | 0.67 | 0.492759 |
Target: 5'- -aCCUGCUcUgcuauggcACGCCGc-CAGCCGCAg -3' miRNA: 3'- uaGGGCGAaA--------UGCGGCuaGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 18443 | 0.66 | 0.557053 |
Target: 5'- --aCCGCUcgaggUGCGCgUGAagCAGCCGCGc -3' miRNA: 3'- uagGGCGAa----AUGCG-GCUa-GUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 4846 | 0.67 | 0.483399 |
Target: 5'- -gCCCGCacagccaaucgagcgUUACGCCGAgcgcgUCAGCCaaucGCAa -3' miRNA: 3'- uaGGGCGa--------------AAUGCGGCU-----AGUCGG----CGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 17901 | 0.67 | 0.482364 |
Target: 5'- -aCCgGCggcGCGCCGAUCAGCauCAa -3' miRNA: 3'- uaGGgCGaaaUGCGGCUAGUCGgcGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 7312 | 0.68 | 0.472076 |
Target: 5'- gGUCUgCGCgaUGCGCuCGAUCAGCauCGCGu -3' miRNA: 3'- -UAGG-GCGaaAUGCG-GCUAGUCG--GCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 37340 | 0.68 | 0.4619 |
Target: 5'- -aCCgCGCgcagcuuugAUGCCGA-CGGCCGCAu -3' miRNA: 3'- uaGG-GCGaaa------UGCGGCUaGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 27325 | 0.68 | 0.4619 |
Target: 5'- -aCCCGac--GCGCCGAcgaUCAGCgGCGc -3' miRNA: 3'- uaGGGCgaaaUGCGGCU---AGUCGgCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 45261 | 0.71 | 0.309247 |
Target: 5'- ---aCGCUgcgACGCUGAUCgaAGCCGCAu -3' miRNA: 3'- uaggGCGAaa-UGCGGCUAG--UCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 26999 | 0.71 | 0.309247 |
Target: 5'- -aCCCGCU--GCGCCGGgcUCGucGCCGCc -3' miRNA: 3'- uaGGGCGAaaUGCGGCU--AGU--CGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 7403 | 0.7 | 0.333177 |
Target: 5'- --gUCGCgagUGCGCCGAacaguucgUCGGCCGCu -3' miRNA: 3'- uagGGCGaa-AUGCGGCU--------AGUCGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 15888 | 0.74 | 0.198185 |
Target: 5'- -aCCCGCUgcagcuuuacACGCUGAUCucGCCGCAg -3' miRNA: 3'- uaGGGCGAaa--------UGCGGCUAGu-CGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 44582 | 1.07 | 0.000758 |
Target: 5'- gAUCCCGCUUUACGCCGAUCAGCCGCAa -3' miRNA: 3'- -UAGGGCGAAAUGCGGCUAGUCGGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 25760 | 0.68 | 0.432089 |
Target: 5'- -gCCCGCgugaucUGCGUCGAgaagCAGcCCGCGc -3' miRNA: 3'- uaGGGCGaa----AUGCGGCUa---GUC-GGCGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 21777 | 0.72 | 0.251912 |
Target: 5'- cGUCCCGCaaccgaccUUcACGCCGAcCGGCCuGCAg -3' miRNA: 3'- -UAGGGCG--------AAaUGCGGCUaGUCGG-CGU- -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 38563 | 0.68 | 0.432089 |
Target: 5'- --gCCGCga-GCGCCGcGUCGGUCGCu -3' miRNA: 3'- uagGGCGaaaUGCGGC-UAGUCGGCGu -5' |
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24117 | 5' | -56.6 | NC_005263.2 | + | 45139 | 0.68 | 0.432089 |
Target: 5'- cAUUCCGCUgacgggcaucACGCuCGcgCAGCUGCAg -3' miRNA: 3'- -UAGGGCGAaa--------UGCG-GCuaGUCGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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