Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24118 | 5' | -59.2 | NC_005263.2 | + | 8765 | 0.7 | 0.303583 |
Target: 5'- -aACGcUGCGCGgcaggaUGAcgCCGGCCCGcGCg -3' miRNA: 3'- cgUGC-AUGCGCg-----ACUa-GGCCGGGC-CG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 21713 | 0.69 | 0.310998 |
Target: 5'- gGUGCGUGCG-GCUGGaaUCCaaGGCUCGGg -3' miRNA: 3'- -CGUGCAUGCgCGACU--AGG--CCGGGCCg -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 17537 | 0.69 | 0.310998 |
Target: 5'- gGCAaacggUGUGCGCGa--AUCCGGUCUGGUg -3' miRNA: 3'- -CGU-----GCAUGCGCgacUAGGCCGGGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 30622 | 0.69 | 0.318549 |
Target: 5'- gGCAUGU-CGaggauGCUGcgCCGGCC-GGCg -3' miRNA: 3'- -CGUGCAuGCg----CGACuaGGCCGGgCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 1556 | 0.69 | 0.318549 |
Target: 5'- aGCACGUuCGUGUUGcgCaCGGUauagaCGGCa -3' miRNA: 3'- -CGUGCAuGCGCGACuaG-GCCGg----GCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 18802 | 0.69 | 0.334062 |
Target: 5'- cGCGCGcgAUGCGCaug-CCGaCCCGGCc -3' miRNA: 3'- -CGUGCa-UGCGCGacuaGGCcGGGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 38177 | 0.69 | 0.334062 |
Target: 5'- uCGCGUuCGaCGCUGAUCCaGCUgccgaucuCGGCa -3' miRNA: 3'- cGUGCAuGC-GCGACUAGGcCGG--------GCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 38231 | 0.69 | 0.334062 |
Target: 5'- aGCAUGaaaGCGCcgaggacaacgaGCUGaAUCCGGCC-GGCg -3' miRNA: 3'- -CGUGCa--UGCG------------CGAC-UAGGCCGGgCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 25772 | 0.69 | 0.341222 |
Target: 5'- -uGCGUcgagaagcagcccGCGCGCUGAgcgugCCGGCauaaaucaaaCGGCc -3' miRNA: 3'- cgUGCA-------------UGCGCGACUa----GGCCGg---------GCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 23610 | 0.69 | 0.341222 |
Target: 5'- -gACGUACGCGCc-GUUCGGCUuccgcacgaugaaCGGCg -3' miRNA: 3'- cgUGCAUGCGCGacUAGGCCGG-------------GCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 30457 | 0.69 | 0.342024 |
Target: 5'- aGCGCGgcggccuuCGCGUUGcgccacAUCCGGCgccCUGGCg -3' miRNA: 3'- -CGUGCau------GCGCGAC------UAGGCCG---GGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 35790 | 0.69 | 0.350122 |
Target: 5'- gGCGauUACGUGCUGGcgCC-GCUCGGCa -3' miRNA: 3'- -CGUgcAUGCGCGACUa-GGcCGGGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 29352 | 0.69 | 0.350122 |
Target: 5'- cCGgGUGCGCGagcagGcgCCGGuaaCCCGGCg -3' miRNA: 3'- cGUgCAUGCGCga---CuaGGCC---GGGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 45779 | 0.69 | 0.353399 |
Target: 5'- cGCACGgugcuCGCGUUccgccaguucaacgcGGgcgugCCGGCCaCGGCg -3' miRNA: 3'- -CGUGCau---GCGCGA---------------CUa----GGCCGG-GCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 158 | 0.68 | 0.358355 |
Target: 5'- gGUGCGaGCaCGC-GAUCCGcGCCCGGg -3' miRNA: 3'- -CGUGCaUGcGCGaCUAGGC-CGGGCCg -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 36451 | 0.68 | 0.358355 |
Target: 5'- -aACGU-CGCGCUGAUCC-GCUCGa- -3' miRNA: 3'- cgUGCAuGCGCGACUAGGcCGGGCcg -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 10382 | 0.68 | 0.358355 |
Target: 5'- aGC-CGccACGCGCcGggCCGGCC-GGCg -3' miRNA: 3'- -CGuGCa-UGCGCGaCuaGGCCGGgCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 30930 | 0.68 | 0.358355 |
Target: 5'- -gGCGUACGCGCgagcugcgcAUUCGGCUucuCGGCc -3' miRNA: 3'- cgUGCAUGCGCGac-------UAGGCCGG---GCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 3320 | 0.68 | 0.366723 |
Target: 5'- cGCGCGguguucaacgucUGCGCGCcg--CCGGCgCCGcGCg -3' miRNA: 3'- -CGUGC------------AUGCGCGacuaGGCCG-GGC-CG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 18543 | 0.68 | 0.366723 |
Target: 5'- aGCGCGUucaagaaguuCGCGCagc-CCGGCaCCGGUg -3' miRNA: 3'- -CGUGCAu---------GCGCGacuaGGCCG-GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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