miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24119 3' -60.3 NC_005263.2 + 39985 0.74 0.116468
Target:  5'- uCCUGCauaUgGGCCUGCCGCCGacgGCg -3'
miRNA:   3'- -GGACGgccAgCCGGACGGCGGUaa-CG- -5'
24119 3' -60.3 NC_005263.2 + 24984 0.68 0.312473
Target:  5'- -aUGCUGGcCGGCCUGgCCGCaaccggGUa -3'
miRNA:   3'- ggACGGCCaGCCGGAC-GGCGguaa--CG- -5'
24119 3' -60.3 NC_005263.2 + 19064 0.68 0.312473
Target:  5'- --cGCCGcG-CGGCCUGCgcgCGCUggUGCg -3'
miRNA:   3'- ggaCGGC-CaGCCGGACG---GCGGuaACG- -5'
24119 3' -60.3 NC_005263.2 + 2854 0.69 0.290573
Target:  5'- -aUGCgGGcCGGCCcGcCCGCCAgUUGUa -3'
miRNA:   3'- ggACGgCCaGCCGGaC-GGCGGU-AACG- -5'
24119 3' -60.3 NC_005263.2 + 43058 0.69 0.26327
Target:  5'- --cGCCGacGUCGGCCaauagucgGCCGCCGggccgGCu -3'
miRNA:   3'- ggaCGGC--CAGCCGGa-------CGGCGGUaa---CG- -5'
24119 3' -60.3 NC_005263.2 + 15381 0.7 0.250418
Target:  5'- gCUGUCGGguagCGaCCcgGCCGCCGUgcaUGCg -3'
miRNA:   3'- gGACGGCCa---GCcGGa-CGGCGGUA---ACG- -5'
24119 3' -60.3 NC_005263.2 + 38571 0.7 0.232115
Target:  5'- --cGCCGcGUCGGUcgCUGCCGCgCAcgGCc -3'
miRNA:   3'- ggaCGGC-CAGCCG--GACGGCG-GUaaCG- -5'
24119 3' -60.3 NC_005263.2 + 32687 0.71 0.204124
Target:  5'- aCCUguacgGCCGGcucacCGGCUUGCUGCCcgccgUGCg -3'
miRNA:   3'- -GGA-----CGGCCa----GCCGGACGGCGGua---ACG- -5'
24119 3' -60.3 NC_005263.2 + 45399 0.71 0.188277
Target:  5'- aUCUcGCCGacgaacucggucuGUCGGCC-GCCGCCGgcGCg -3'
miRNA:   3'- -GGA-CGGC-------------CAGCCGGaCGGCGGUaaCG- -5'
24119 3' -60.3 NC_005263.2 + 42502 0.68 0.335602
Target:  5'- aCUGCCGcaCGGCCU--CGCCG-UGCg -3'
miRNA:   3'- gGACGGCcaGCCGGAcgGCGGUaACG- -5'
24119 3' -60.3 NC_005263.2 + 13165 0.67 0.351703
Target:  5'- gCUGCCGGcaCGGCaCUaaCGCCGagUGCg -3'
miRNA:   3'- gGACGGCCa-GCCG-GAcgGCGGUa-ACG- -5'
24119 3' -60.3 NC_005263.2 + 27797 0.67 0.351703
Target:  5'- --cGUCGGgaCGGCg-GCCGCCAUcGCg -3'
miRNA:   3'- ggaCGGCCa-GCCGgaCGGCGGUAaCG- -5'
24119 3' -60.3 NC_005263.2 + 47492 0.66 0.434444
Target:  5'- aCCgGCCcgcuGUCgGGCaCUGCCuacguuacugauggcGCCAUUGCc -3'
miRNA:   3'- -GGaCGGc---CAG-CCG-GACGG---------------CGGUAACG- -5'
24119 3' -60.3 NC_005263.2 + 25616 0.66 0.430697
Target:  5'- aCC-GCCGc-CGGCC-GCCGCCg--GCg -3'
miRNA:   3'- -GGaCGGCcaGCCGGaCGGCGGuaaCG- -5'
24119 3' -60.3 NC_005263.2 + 33946 0.66 0.421413
Target:  5'- aCCgGCCGc-CGGCCcgaaGUCGCCAagGCg -3'
miRNA:   3'- -GGaCGGCcaGCCGGa---CGGCGGUaaCG- -5'
24119 3' -60.3 NC_005263.2 + 43451 0.66 0.403213
Target:  5'- cCCgcgcGCCGGcCuGCCcGUCGCCAUgaucGCg -3'
miRNA:   3'- -GGa---CGGCCaGcCGGaCGGCGGUAa---CG- -5'
24119 3' -60.3 NC_005263.2 + 8866 0.66 0.403213
Target:  5'- gCCga-CGGgauacgCGGCCcgUGCUGCCggUGCa -3'
miRNA:   3'- -GGacgGCCa-----GCCGG--ACGGCGGuaACG- -5'
24119 3' -60.3 NC_005263.2 + 3402 0.66 0.394301
Target:  5'- gCUGCa-GUCGGCC-GCCGaCGUgUGCg -3'
miRNA:   3'- gGACGgcCAGCCGGaCGGCgGUA-ACG- -5'
24119 3' -60.3 NC_005263.2 + 9288 0.67 0.385518
Target:  5'- cCCaUGCCGGacauuUCGGCaagcucagcgaUGCCGCUcgUGg -3'
miRNA:   3'- -GG-ACGGCC-----AGCCGg----------ACGGCGGuaACg -5'
24119 3' -60.3 NC_005263.2 + 8359 0.67 0.376866
Target:  5'- gCUUGCCgaGGUC-GCUUGUCGUCAgugGCg -3'
miRNA:   3'- -GGACGG--CCAGcCGGACGGCGGUaa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.