miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24119 3' -60.3 NC_005263.2 + 2400 0.67 0.368344
Target:  5'- --cGCCGG-CGGUCgcuugGUCGCCGUacaGCg -3'
miRNA:   3'- ggaCGGCCaGCCGGa----CGGCGGUAa--CG- -5'
24119 3' -60.3 NC_005263.2 + 22711 0.67 0.368344
Target:  5'- gUCUGCCaGGUCgaGGCCUcGCgGCgCAUgagcGCa -3'
miRNA:   3'- -GGACGG-CCAG--CCGGA-CGgCG-GUAa---CG- -5'
24119 3' -60.3 NC_005263.2 + 23261 0.67 0.351703
Target:  5'- gCCgGCUGGcgcacCGGCa--CCGCCGUUGCc -3'
miRNA:   3'- -GGaCGGCCa----GCCGgacGGCGGUAACG- -5'
24119 3' -60.3 NC_005263.2 + 13165 0.67 0.351703
Target:  5'- gCUGCCGGcaCGGCaCUaaCGCCGagUGCg -3'
miRNA:   3'- gGACGGCCa-GCCG-GAcgGCGGUa-ACG- -5'
24119 3' -60.3 NC_005263.2 + 27797 0.67 0.351703
Target:  5'- --cGUCGGgaCGGCg-GCCGCCAUcGCg -3'
miRNA:   3'- ggaCGGCCa-GCCGgaCGGCGGUAaCG- -5'
24119 3' -60.3 NC_005263.2 + 13758 0.67 0.351703
Target:  5'- gCCagGCCGGaugugUCGGCUuucucuuucgUGCCGCCGaucGCu -3'
miRNA:   3'- -GGa-CGGCC-----AGCCGG----------ACGGCGGUaa-CG- -5'
24119 3' -60.3 NC_005263.2 + 26323 0.67 0.343585
Target:  5'- --gGCCGGUCGGCgUGaagGUCgGUUGCg -3'
miRNA:   3'- ggaCGGCCAGCCGgACgg-CGG-UAACG- -5'
24119 3' -60.3 NC_005263.2 + 42502 0.68 0.335602
Target:  5'- aCUGCCGcaCGGCCU--CGCCG-UGCg -3'
miRNA:   3'- gGACGGCcaGCCGGAcgGCGGUaACG- -5'
24119 3' -60.3 NC_005263.2 + 27294 0.68 0.334811
Target:  5'- aCCUGCCGcGcCGGCCaggaacuUGaC-CCAUUGCg -3'
miRNA:   3'- -GGACGGC-CaGCCGG-------ACgGcGGUAACG- -5'
24119 3' -60.3 NC_005263.2 + 13006 0.68 0.327756
Target:  5'- --gGCCGGUCGGCgUGauGCCGaguaGCu -3'
miRNA:   3'- ggaCGGCCAGCCGgACggCGGUaa--CG- -5'
24119 3' -60.3 NC_005263.2 + 19064 0.68 0.312473
Target:  5'- --cGCCGcG-CGGCCUGCgcgCGCUggUGCg -3'
miRNA:   3'- ggaCGGC-CaGCCGGACG---GCGGuaACG- -5'
24119 3' -60.3 NC_005263.2 + 24984 0.68 0.312473
Target:  5'- -aUGCUGGcCGGCCUGgCCGCaaccggGUa -3'
miRNA:   3'- ggACGGCCaGCCGGAC-GGCGguaa--CG- -5'
24119 3' -60.3 NC_005263.2 + 31597 0.68 0.305037
Target:  5'- uUUGCCGGUUGGUCaUGCCggucgcgacgGCCGcgcgGCg -3'
miRNA:   3'- gGACGGCCAGCCGG-ACGG----------CGGUaa--CG- -5'
24119 3' -60.3 NC_005263.2 + 17407 0.68 0.30064
Target:  5'- aCUGCCGcuacugcaaagcgaaGcCGGCCUGCcCGCgCAU-GCa -3'
miRNA:   3'- gGACGGC---------------CaGCCGGACG-GCG-GUAaCG- -5'
24119 3' -60.3 NC_005263.2 + 2854 0.69 0.290573
Target:  5'- -aUGCgGGcCGGCCcGcCCGCCAgUUGUa -3'
miRNA:   3'- ggACGgCCaGCCGGaC-GGCGGU-AACG- -5'
24119 3' -60.3 NC_005263.2 + 21399 0.69 0.276653
Target:  5'- gCUGCCgcaGGcCGGCCUGCUcgGCgCAUuacgUGCg -3'
miRNA:   3'- gGACGG---CCaGCCGGACGG--CG-GUA----ACG- -5'
24119 3' -60.3 NC_005263.2 + 10181 0.69 0.269895
Target:  5'- gCUGCCGGcggCGcGCCUGC-GCCcg-GCu -3'
miRNA:   3'- gGACGGCCa--GC-CGGACGgCGGuaaCG- -5'
24119 3' -60.3 NC_005263.2 + 30520 0.69 0.26327
Target:  5'- cCCUGCgCGccUUGGCC-GCCGCCGUUcGUg -3'
miRNA:   3'- -GGACG-GCc-AGCCGGaCGGCGGUAA-CG- -5'
24119 3' -60.3 NC_005263.2 + 43058 0.69 0.26327
Target:  5'- --cGCCGacGUCGGCCaauagucgGCCGCCGggccgGCu -3'
miRNA:   3'- ggaCGGC--CAGCCGGa-------CGGCGGUaa---CG- -5'
24119 3' -60.3 NC_005263.2 + 20552 0.69 0.256778
Target:  5'- aCCUcGCCGcgacgcucGUgccCGGCCUGCCGgCcgUGCc -3'
miRNA:   3'- -GGA-CGGC--------CA---GCCGGACGGCgGuaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.