miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 3' -54.4 NC_005263.2 + 43413 1.11 0.000805
Target:  5'- gGCAAGAAGCUCGCCGACGGCACGAUCc -3'
miRNA:   3'- -CGUUCUUCGAGCGGCUGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 47400 0.79 0.128319
Target:  5'- cCAcGgcGCUCGCgggCGGCGGCACGAUCg -3'
miRNA:   3'- cGUuCuuCGAGCG---GCUGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 39077 0.77 0.200198
Target:  5'- cGUAGccGGCUCGCCGucgcGCGGCACGAa- -3'
miRNA:   3'- -CGUUcuUCGAGCGGC----UGCCGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 20856 0.76 0.205696
Target:  5'- -gGAGAccuaacGCUaucgGCCGGCGGCGCGAUCa -3'
miRNA:   3'- cgUUCUu-----CGAg---CGGCUGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 42638 0.76 0.211323
Target:  5'- aGCAcGAAGCagCGCCGACguGGCAacCGAUCg -3'
miRNA:   3'- -CGUuCUUCGa-GCGGCUG--CCGU--GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 26291 0.76 0.211323
Target:  5'- cGCGAGAAuggcuuGCUCGCCGGCcagcugcaGGC-CGGUCg -3'
miRNA:   3'- -CGUUCUU------CGAGCGGCUG--------CCGuGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 3428 0.75 0.261238
Target:  5'- cGCAGGAuGGC-CGCCGAcuucuuCGGCGCGcgCg -3'
miRNA:   3'- -CGUUCU-UCGaGCGGCU------GCCGUGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 14956 0.74 0.282296
Target:  5'- uGCAAGgcGCcgCGCCauggcuGGCGGCAgCGAUCu -3'
miRNA:   3'- -CGUUCuuCGa-GCGG------CUGCCGU-GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 9559 0.74 0.289609
Target:  5'- cGCucGcGGCUUGCCaGGCGGCGCGcUCg -3'
miRNA:   3'- -CGuuCuUCGAGCGG-CUGCCGUGCuAG- -5'
24121 3' -54.4 NC_005263.2 + 39973 0.74 0.292575
Target:  5'- cGCAAGAAGCUguccUgcauaugggccugccGCCGACGGCGaugucCGAUCu -3'
miRNA:   3'- -CGUUCUUCGA----G---------------CGGCUGCCGU-----GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 24787 0.74 0.30391
Target:  5'- gGCGucGGcGGCUCGCCGggcgucgGCGGCGCGuauUCg -3'
miRNA:   3'- -CGU--UCuUCGAGCGGC-------UGCCGUGCu--AG- -5'
24121 3' -54.4 NC_005263.2 + 36548 0.74 0.304678
Target:  5'- uGCAAGAcaAGCUCGUCGagcGCGGCAaGGUg -3'
miRNA:   3'- -CGUUCU--UCGAGCGGC---UGCCGUgCUAg -5'
24121 3' -54.4 NC_005263.2 + 37593 0.73 0.344954
Target:  5'- uGCGuc-AGCUCGCCGACGcGCugGuuuAUCa -3'
miRNA:   3'- -CGUucuUCGAGCGGCUGC-CGugC---UAG- -5'
24121 3' -54.4 NC_005263.2 + 30337 0.73 0.344954
Target:  5'- uGCGAGAAGCgcgUGCCGagcGCGGC-CGcgCu -3'
miRNA:   3'- -CGUUCUUCGa--GCGGC---UGCCGuGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 28936 0.72 0.370894
Target:  5'- cGCGGccacGAGCcgCGCCGGCGgauGCACGGUCa -3'
miRNA:   3'- -CGUUc---UUCGa-GCGGCUGC---CGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 35966 0.72 0.383448
Target:  5'- uGCAAGgcGCUCGaCCGccuggagcgcgcguaAUGGCGCGcgCg -3'
miRNA:   3'- -CGUUCuuCGAGC-GGC---------------UGCCGUGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 7074 0.72 0.398135
Target:  5'- aCAGGuGGGCUuCGUCGACGaGCACGAagUCg -3'
miRNA:   3'- cGUUC-UUCGA-GCGGCUGC-CGUGCU--AG- -5'
24121 3' -54.4 NC_005263.2 + 34315 0.72 0.398135
Target:  5'- cGCAccuGggGCgaagCGaUCGGCGGCACGAa- -3'
miRNA:   3'- -CGUu--CuuCGa---GC-GGCUGCCGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 47932 0.71 0.436388
Target:  5'- gGCAGcGGGCUCGCCccgGGCGCgGAUCg -3'
miRNA:   3'- -CGUUcUUCGAGCGGcugCCGUG-CUAG- -5'
24121 3' -54.4 NC_005263.2 + 416 0.7 0.456292
Target:  5'- cCGAGcAGCUUGCCGcACaGCACGAg- -3'
miRNA:   3'- cGUUCuUCGAGCGGC-UGcCGUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.