miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 3' -54.4 NC_005263.2 + 416 0.7 0.456292
Target:  5'- cCGAGcAGCUUGCCGcACaGCACGAg- -3'
miRNA:   3'- cGUUCuUCGAGCGGC-UGcCGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 1269 0.66 0.728338
Target:  5'- cCGGGuaAGGCUCaGUCGgaGCGGCGCGAa- -3'
miRNA:   3'- cGUUC--UUCGAG-CGGC--UGCCGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 1397 0.67 0.67352
Target:  5'- aGCGGGuucgauuauuGCUUGUCGuCGGCGCGcgCc -3'
miRNA:   3'- -CGUUCuu--------CGAGCGGCuGCCGUGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 1419 0.68 0.606512
Target:  5'- ------cGCUUGCCGACGGC-CGGguUCg -3'
miRNA:   3'- cguucuuCGAGCGGCUGCCGuGCU--AG- -5'
24121 3' -54.4 NC_005263.2 + 2273 0.68 0.573178
Target:  5'- cGCAGcgcGUUCGCCGuCGGCA-GGUCg -3'
miRNA:   3'- -CGUUcuuCGAGCGGCuGCCGUgCUAG- -5'
24121 3' -54.4 NC_005263.2 + 2478 0.67 0.684611
Target:  5'- uCGAGGAGCgccucaUCGuaGACGugauGCACGAUCu -3'
miRNA:   3'- cGUUCUUCG------AGCggCUGC----CGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 3428 0.75 0.261238
Target:  5'- cGCAGGAuGGC-CGCCGAcuucuuCGGCGCGcgCg -3'
miRNA:   3'- -CGUUCU-UCGaGCGGCU------GCCGUGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 6038 0.69 0.562154
Target:  5'- cGCGAGcacgccccGUUCGuuGGCGGCGCGcuUCa -3'
miRNA:   3'- -CGUUCuu------CGAGCggCUGCCGUGCu-AG- -5'
24121 3' -54.4 NC_005263.2 + 6235 0.66 0.69565
Target:  5'- uGCccGAucGCUCGCgGccaGGCGCGGUCg -3'
miRNA:   3'- -CGuuCUu-CGAGCGgCug-CCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 6592 0.68 0.573178
Target:  5'- cGCAAGuAGUcgacgcgaUCGCguuCGGCGGCGCGcUCg -3'
miRNA:   3'- -CGUUCuUCG--------AGCG---GCUGCCGUGCuAG- -5'
24121 3' -54.4 NC_005263.2 + 6831 0.67 0.67352
Target:  5'- uGCGGGAAGCgcagCGaCGGCGaCACGAc- -3'
miRNA:   3'- -CGUUCUUCGa---GCgGCUGCcGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 7027 0.67 0.651229
Target:  5'- uGCAuGucGCgCGCCGACGGaugGCGcAUCg -3'
miRNA:   3'- -CGUuCuuCGaGCGGCUGCCg--UGC-UAG- -5'
24121 3' -54.4 NC_005263.2 + 7074 0.72 0.398135
Target:  5'- aCAGGuGGGCUuCGUCGACGaGCACGAagUCg -3'
miRNA:   3'- cGUUC-UUCGA-GCGGCUGC-CGUGCU--AG- -5'
24121 3' -54.4 NC_005263.2 + 7312 0.68 0.626628
Target:  5'- gGCAGGuGGCcuucgucUCGCCGuguccgaacugccACGGCugGAUg -3'
miRNA:   3'- -CGUUCuUCG-------AGCGGC-------------UGCCGugCUAg -5'
24121 3' -54.4 NC_005263.2 + 7339 0.7 0.476674
Target:  5'- cGCGuucAGGAGCgacuugcCGCCGcCGGUgACGAUCg -3'
miRNA:   3'- -CGU---UCUUCGa------GCGGCuGCCG-UGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 8035 0.66 0.706625
Target:  5'- uGCGAGgcGUccgCGCCGugGcgccGCGCGAg- -3'
miRNA:   3'- -CGUUCuuCGa--GCGGCugC----CGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 9358 0.66 0.69565
Target:  5'- cGguGaAGGCgagCGCCGGCGGCuGCGGg- -3'
miRNA:   3'- -CguUcUUCGa--GCGGCUGCCG-UGCUag -5'
24121 3' -54.4 NC_005263.2 + 9559 0.74 0.289609
Target:  5'- cGCucGcGGCUUGCCaGGCGGCGCGcUCg -3'
miRNA:   3'- -CGuuCuUCGAGCGG-CUGCCGUGCuAG- -5'
24121 3' -54.4 NC_005263.2 + 9753 0.69 0.518718
Target:  5'- uCGAGgcGCauuUCGCCGgucgccGCGuGCACGGUCg -3'
miRNA:   3'- cGUUCuuCG---AGCGGC------UGC-CGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 9889 0.67 0.684611
Target:  5'- cGCuuucauGCUCGUCGuCGGCGCGcggcGUCg -3'
miRNA:   3'- -CGuucuu-CGAGCGGCuGCCGUGC----UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.