miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 3' -54.4 NC_005263.2 + 47932 0.71 0.436388
Target:  5'- gGCAGcGGGCUCGCCccgGGCGCgGAUCg -3'
miRNA:   3'- -CGUUcUUCGAGCGGcugCCGUG-CUAG- -5'
24121 3' -54.4 NC_005263.2 + 47400 0.79 0.128319
Target:  5'- cCAcGgcGCUCGCgggCGGCGGCACGAUCg -3'
miRNA:   3'- cGUuCuuCGAGCG---GCUGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 46148 0.66 0.70334
Target:  5'- uGCAgcAGAucgacgcgguugccGGCgUCGCCGGugcCGGCGCGcUCg -3'
miRNA:   3'- -CGU--UCU--------------UCG-AGCGGCU---GCCGUGCuAG- -5'
24121 3' -54.4 NC_005263.2 + 44918 0.66 0.739052
Target:  5'- ------cGCUCGCCGACGcGCAgCGGc- -3'
miRNA:   3'- cguucuuCGAGCGGCUGC-CGU-GCUag -5'
24121 3' -54.4 NC_005263.2 + 44762 0.67 0.640051
Target:  5'- cGCucGAccgcGCgcggCGCCGGCGGCGCGc-- -3'
miRNA:   3'- -CGuuCUu---CGa---GCGGCUGCCGUGCuag -5'
24121 3' -54.4 NC_005263.2 + 44153 0.67 0.67352
Target:  5'- gGCcuGccAGGCUCGCUGGCuGGCGCGu-- -3'
miRNA:   3'- -CGuuC--UUCGAGCGGCUG-CCGUGCuag -5'
24121 3' -54.4 NC_005263.2 + 43920 0.66 0.728338
Target:  5'- gGCGcAGAAGCacaCGCCGcuGCaGCACGAg- -3'
miRNA:   3'- -CGU-UCUUCGa--GCGGC--UGcCGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 43759 0.66 0.714264
Target:  5'- aGCAGGAgaucguuaAGUgaauuugcacgauaUCGUgcGCGGCGCGAUCa -3'
miRNA:   3'- -CGUUCU--------UCG--------------AGCGgcUGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 43724 0.66 0.728338
Target:  5'- uGCAAGua-UUCGCCGACcGCAUGcgCu -3'
miRNA:   3'- -CGUUCuucGAGCGGCUGcCGUGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 43413 1.11 0.000805
Target:  5'- gGCAAGAAGCUCGCCGACGGCACGAUCc -3'
miRNA:   3'- -CGUUCUUCGAGCGGCUGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 42638 0.76 0.211323
Target:  5'- aGCAcGAAGCagCGCCGACguGGCAacCGAUCg -3'
miRNA:   3'- -CGUuCUUCGa-GCGGCUG--CCGU--GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 41850 0.66 0.706625
Target:  5'- ----cAAGCUgC-CCGACGGCACGAc- -3'
miRNA:   3'- cguucUUCGA-GcGGCUGCCGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 41736 0.68 0.628865
Target:  5'- cGCGGGcGGCaacuUCggGCgGcACGGCGCGAUCa -3'
miRNA:   3'- -CGUUCuUCG----AG--CGgC-UGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 41342 0.7 0.456292
Target:  5'- aCGAGGccgAGCUCGcCCGGCG-CGCGAUg -3'
miRNA:   3'- cGUUCU---UCGAGC-GGCUGCcGUGCUAg -5'
24121 3' -54.4 NC_005263.2 + 40661 0.66 0.739052
Target:  5'- aGCAGGAAGCcuuggcauUCGUgcgcuaccugcuCGACGcGC-CGAUCu -3'
miRNA:   3'- -CGUUCUUCG--------AGCG------------GCUGC-CGuGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 39973 0.74 0.292575
Target:  5'- cGCAAGAAGCUguccUgcauaugggccugccGCCGACGGCGaugucCGAUCu -3'
miRNA:   3'- -CGUUCUUCGA----G---------------CGGCUGCCGU-----GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 39352 0.7 0.487033
Target:  5'- gGCAGccGAuucGCUCGgCGGCGGCGCGcuUCu -3'
miRNA:   3'- -CGUU--CUu--CGAGCgGCUGCCGUGCu-AG- -5'
24121 3' -54.4 NC_005263.2 + 39077 0.77 0.200198
Target:  5'- cGUAGccGGCUCGCCGucgcGCGGCACGAa- -3'
miRNA:   3'- -CGUUcuUCGAGCGGC----UGCCGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 38875 0.69 0.551189
Target:  5'- gGCAcGuucgccguGCUgaaCGCCGACGGCACcGUCa -3'
miRNA:   3'- -CGUuCuu------CGA---GCGGCUGCCGUGcUAG- -5'
24121 3' -54.4 NC_005263.2 + 38809 0.68 0.628865
Target:  5'- gGCAucgcuGAGCUUGCCGAaaugucCGGCAUGGg- -3'
miRNA:   3'- -CGUuc---UUCGAGCGGCU------GCCGUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.