miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 3' -54.4 NC_005263.2 + 26291 0.76 0.211323
Target:  5'- cGCGAGAAuggcuuGCUCGCCGGCcagcugcaGGC-CGGUCg -3'
miRNA:   3'- -CGUUCUU------CGAGCGGCUG--------CCGuGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 7312 0.68 0.626628
Target:  5'- gGCAGGuGGCcuucgucUCGCCGuguccgaacugccACGGCugGAUg -3'
miRNA:   3'- -CGUUCuUCG-------AGCGGC-------------UGCCGugCUAg -5'
24121 3' -54.4 NC_005263.2 + 38809 0.68 0.628865
Target:  5'- gGCAucgcuGAGCUUGCCGAaaugucCGGCAUGGg- -3'
miRNA:   3'- -CGUuc---UUCGAGCGGCU------GCCGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 18636 0.66 0.739052
Target:  5'- gGCAacccGGgcGC-CGCUGGCGGUACGc-- -3'
miRNA:   3'- -CGU----UCuuCGaGCGGCUGCCGUGCuag -5'
24121 3' -54.4 NC_005263.2 + 30337 0.73 0.344954
Target:  5'- uGCGAGAAGCgcgUGCCGagcGCGGC-CGcgCu -3'
miRNA:   3'- -CGUUCUUCGa--GCGGC---UGCCGuGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 41342 0.7 0.456292
Target:  5'- aCGAGGccgAGCUCGcCCGGCG-CGCGAUg -3'
miRNA:   3'- cGUUCU---UCGAGC-GGCUGCcGUGCUAg -5'
24121 3' -54.4 NC_005263.2 + 39352 0.7 0.487033
Target:  5'- gGCAGccGAuucGCUCGgCGGCGGCGCGcuUCu -3'
miRNA:   3'- -CGUU--CUu--CGAGCgGCUGCCGUGCu-AG- -5'
24121 3' -54.4 NC_005263.2 + 25322 0.7 0.508061
Target:  5'- uCGAGAAGC-CGCUcacaaacGCGGCgACGAUCg -3'
miRNA:   3'- cGUUCUUCGaGCGGc------UGCCG-UGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 37710 0.68 0.573178
Target:  5'- cGCcGGAcccGCUCGCCGGCcggcccGGCGCGuggCg -3'
miRNA:   3'- -CGuUCUu--CGAGCGGCUG------CCGUGCua-G- -5'
24121 3' -54.4 NC_005263.2 + 33992 0.68 0.606512
Target:  5'- gGCGAGGccggccguguuGGCUgCGUCG-CGGCgcGCGAUCc -3'
miRNA:   3'- -CGUUCU-----------UCGA-GCGGCuGCCG--UGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 10174 0.68 0.606512
Target:  5'- cGCAcc-GGCU-GCCGGCGGCGCGc-- -3'
miRNA:   3'- -CGUucuUCGAgCGGCUGCCGUGCuag -5'
24121 3' -54.4 NC_005263.2 + 6592 0.68 0.573178
Target:  5'- cGCAAGuAGUcgacgcgaUCGCguuCGGCGGCGCGcUCg -3'
miRNA:   3'- -CGUUCuUCG--------AGCG---GCUGCCGUGCuAG- -5'
24121 3' -54.4 NC_005263.2 + 42638 0.76 0.211323
Target:  5'- aGCAcGAAGCagCGCCGACguGGCAacCGAUCg -3'
miRNA:   3'- -CGUuCUUCGa-GCGGCUG--CCGU--GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 15023 0.68 0.606512
Target:  5'- cGCAAGcAGaucauUCGCCGACcaaGGCGuacCGAUCa -3'
miRNA:   3'- -CGUUCuUCg----AGCGGCUG---CCGU---GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 9559 0.74 0.289609
Target:  5'- cGCucGcGGCUUGCCaGGCGGCGCGcUCg -3'
miRNA:   3'- -CGuuCuUCGAGCGG-CUGCCGUGCuAG- -5'
24121 3' -54.4 NC_005263.2 + 2273 0.68 0.573178
Target:  5'- cGCAGcgcGUUCGCCGuCGGCA-GGUCg -3'
miRNA:   3'- -CGUUcuuCGAGCGGCuGCCGUgCUAG- -5'
24121 3' -54.4 NC_005263.2 + 32907 0.68 0.606512
Target:  5'- --cGGAAGCgcuugccgacgUCGCgCGGCGGCucgcguCGAUCa -3'
miRNA:   3'- cguUCUUCG-----------AGCG-GCUGCCGu-----GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 22139 0.68 0.628865
Target:  5'- cGUucGAGGCauUCcUCGACGGCGCGAcgcUCg -3'
miRNA:   3'- -CGuuCUUCG--AGcGGCUGCCGUGCU---AG- -5'
24121 3' -54.4 NC_005263.2 + 37593 0.73 0.344954
Target:  5'- uGCGuc-AGCUCGCCGACGcGCugGuuuAUCa -3'
miRNA:   3'- -CGUucuUCGAGCGGCUGC-CGugC---UAG- -5'
24121 3' -54.4 NC_005263.2 + 30172 0.7 0.466426
Target:  5'- cGCGGGucGUUCGCuaCGACGGuCACGGg- -3'
miRNA:   3'- -CGUUCuuCGAGCG--GCUGCC-GUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.