miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 3' -54.4 NC_005263.2 + 15023 0.68 0.606512
Target:  5'- cGCAAGcAGaucauUCGCCGACcaaGGCGuacCGAUCa -3'
miRNA:   3'- -CGUUCuUCg----AGCGGCUG---CCGU---GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 37593 0.73 0.344954
Target:  5'- uGCGuc-AGCUCGCCGACGcGCugGuuuAUCa -3'
miRNA:   3'- -CGUucuUCGAGCGGCUGC-CGugC---UAG- -5'
24121 3' -54.4 NC_005263.2 + 26710 0.66 0.737985
Target:  5'- aGCAGGAcgAGCUcCGUgugcaugCGAUGGUACGuuuUCa -3'
miRNA:   3'- -CGUUCU--UCGA-GCG-------GCUGCCGUGCu--AG- -5'
24121 3' -54.4 NC_005263.2 + 26346 0.67 0.684611
Target:  5'- uGCGGGAcGUUgGUCGugGucaugcGCGCGAUCu -3'
miRNA:   3'- -CGUUCUuCGAgCGGCugC------CGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 7312 0.68 0.626628
Target:  5'- gGCAGGuGGCcuucgucUCGCCGuguccgaacugccACGGCugGAUg -3'
miRNA:   3'- -CGUUCuUCG-------AGCGGC-------------UGCCGugCUAg -5'
24121 3' -54.4 NC_005263.2 + 9559 0.74 0.289609
Target:  5'- cGCucGcGGCUUGCCaGGCGGCGCGcUCg -3'
miRNA:   3'- -CGuuCuUCGAGCGG-CUGCCGUGCuAG- -5'
24121 3' -54.4 NC_005263.2 + 20892 0.67 0.684611
Target:  5'- gGCAGGAGGCgcacgggaugaCGCCGgAUGGCguguACgGAUCg -3'
miRNA:   3'- -CGUUCUUCGa----------GCGGC-UGCCG----UG-CUAG- -5'
24121 3' -54.4 NC_005263.2 + 42638 0.76 0.211323
Target:  5'- aGCAcGAAGCagCGCCGACguGGCAacCGAUCg -3'
miRNA:   3'- -CGUuCUUCGa-GCGGCUG--CCGU--GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 26291 0.76 0.211323
Target:  5'- cGCGAGAAuggcuuGCUCGCCGGCcagcugcaGGC-CGGUCg -3'
miRNA:   3'- -CGUUCUU------CGAGCGGCUG--------CCGuGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 6592 0.68 0.573178
Target:  5'- cGCAAGuAGUcgacgcgaUCGCguuCGGCGGCGCGcUCg -3'
miRNA:   3'- -CGUUCuUCG--------AGCG---GCUGCCGUGCuAG- -5'
24121 3' -54.4 NC_005263.2 + 22139 0.68 0.628865
Target:  5'- cGUucGAGGCauUCcUCGACGGCGCGAcgcUCg -3'
miRNA:   3'- -CGuuCUUCG--AGcGGCUGCCGUGCU---AG- -5'
24121 3' -54.4 NC_005263.2 + 7027 0.67 0.651229
Target:  5'- uGCAuGucGCgCGCCGACGGaugGCGcAUCg -3'
miRNA:   3'- -CGUuCuuCGaGCGGCUGCCg--UGC-UAG- -5'
24121 3' -54.4 NC_005263.2 + 10419 0.66 0.694548
Target:  5'- cGCAGGAaaggucggacAGCUCGuCCGAUucaaucaGGU-CGAUCg -3'
miRNA:   3'- -CGUUCU----------UCGAGC-GGCUG-------CCGuGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 41850 0.66 0.706625
Target:  5'- ----cAAGCUgC-CCGACGGCACGAc- -3'
miRNA:   3'- cguucUUCGA-GcGGCUGCCGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 29051 0.66 0.739052
Target:  5'- cGCAGGccGCgcggcgCGUCcucggGGCGGCGCGcAUCg -3'
miRNA:   3'- -CGUUCuuCGa-----GCGG-----CUGCCGUGC-UAG- -5'
24121 3' -54.4 NC_005263.2 + 37710 0.68 0.573178
Target:  5'- cGCcGGAcccGCUCGCCGGCcggcccGGCGCGuggCg -3'
miRNA:   3'- -CGuUCUu--CGAGCGGCUG------CCGUGCua-G- -5'
24121 3' -54.4 NC_005263.2 + 30337 0.73 0.344954
Target:  5'- uGCGAGAAGCgcgUGCCGagcGCGGC-CGcgCu -3'
miRNA:   3'- -CGUUCUUCGa--GCGGC---UGCCGuGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 39352 0.7 0.487033
Target:  5'- gGCAGccGAuucGCUCGgCGGCGGCGCGcuUCu -3'
miRNA:   3'- -CGUU--CUu--CGAGCgGCUGCCGUGCu-AG- -5'
24121 3' -54.4 NC_005263.2 + 33968 0.68 0.584251
Target:  5'- cCAAGGcggccgcGCUgGCCGcuGCGGCuACGAUCg -3'
miRNA:   3'- cGUUCUu------CGAgCGGC--UGCCG-UGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 6235 0.66 0.69565
Target:  5'- uGCccGAucGCUCGCgGccaGGCGCGGUCg -3'
miRNA:   3'- -CGuuCUu-CGAGCGgCug-CCGUGCUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.