miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 3' -54.4 NC_005263.2 + 19475 0.66 0.739052
Target:  5'- gGCAGGAcguGCUcaCGCCGAucaCGaGCgauACGAUCa -3'
miRNA:   3'- -CGUUCUu--CGA--GCGGCU---GC-CG---UGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 32998 0.66 0.739052
Target:  5'- uGCAGGAcgGGCUCGa-GAacUGGUACGAcUCg -3'
miRNA:   3'- -CGUUCU--UCGAGCggCU--GCCGUGCU-AG- -5'
24121 3' -54.4 NC_005263.2 + 40661 0.66 0.739052
Target:  5'- aGCAGGAAGCcuuggcauUCGUgcgcuaccugcuCGACGcGC-CGAUCu -3'
miRNA:   3'- -CGUUCUUCG--------AGCG------------GCUGC-CGuGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 43759 0.66 0.714264
Target:  5'- aGCAGGAgaucguuaAGUgaauuugcacgauaUCGUgcGCGGCGCGAUCa -3'
miRNA:   3'- -CGUUCU--------UCG--------------AGCGgcUGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 8035 0.66 0.706625
Target:  5'- uGCGAGgcGUccgCGCCGugGcgccGCGCGAg- -3'
miRNA:   3'- -CGUUCuuCGa--GCGGCugC----CGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 28049 0.66 0.706625
Target:  5'- aGCAucaguuAGcAGCgCGUCGcacucaacgcGCGGCACGAUCc -3'
miRNA:   3'- -CGU------UCuUCGaGCGGC----------UGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 36805 0.66 0.707719
Target:  5'- gGCGAGGccauaaauugccgcuGCUCGUCG-C-GCACGAUCa -3'
miRNA:   3'- -CGUUCUu--------------CGAGCGGCuGcCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 18746 0.66 0.706625
Target:  5'- cGCcAGAucGGCgcgaUCGuaGGCGGCGCGGUg -3'
miRNA:   3'- -CGuUCU--UCG----AGCggCUGCCGUGCUAg -5'
24121 3' -54.4 NC_005263.2 + 27371 0.67 0.640051
Target:  5'- aGCGAGcGGCgCGgCGGCGGCcgGCGcgCu -3'
miRNA:   3'- -CGUUCuUCGaGCgGCUGCCG--UGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 44762 0.67 0.640051
Target:  5'- cGCucGAccgcGCgcggCGCCGGCGGCGCGc-- -3'
miRNA:   3'- -CGuuCUu---CGa---GCGGCUGCCGUGCuag -5'
24121 3' -54.4 NC_005263.2 + 44153 0.67 0.67352
Target:  5'- gGCcuGccAGGCUCGCUGGCuGGCGCGu-- -3'
miRNA:   3'- -CGuuC--UUCGAGCGGCUG-CCGUGCuag -5'
24121 3' -54.4 NC_005263.2 + 15207 0.67 0.640051
Target:  5'- aGCGGGccGCcgaCGCCGACGcCACGAa- -3'
miRNA:   3'- -CGUUCuuCGa--GCGGCUGCcGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 2478 0.67 0.684611
Target:  5'- uCGAGGAGCgccucaUCGuaGACGugauGCACGAUCu -3'
miRNA:   3'- cGUUCUUCG------AGCggCUGC----CGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 9889 0.67 0.684611
Target:  5'- cGCuuucauGCUCGUCGuCGGCGCGcggcGUCg -3'
miRNA:   3'- -CGuucuu-CGAGCGGCuGCCGUGC----UAG- -5'
24121 3' -54.4 NC_005263.2 + 26346 0.67 0.684611
Target:  5'- uGCGGGAcGUUgGUCGugGucaugcGCGCGAUCu -3'
miRNA:   3'- -CGUUCUuCGAgCGGCugC------CGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 20892 0.67 0.684611
Target:  5'- gGCAGGAGGCgcacgggaugaCGCCGgAUGGCguguACgGAUCg -3'
miRNA:   3'- -CGUUCUUCGa----------GCGGC-UGCCG----UG-CUAG- -5'
24121 3' -54.4 NC_005263.2 + 38081 0.67 0.67352
Target:  5'- uCGAGcAGCUCGgCGGCGGUGCu--- -3'
miRNA:   3'- cGUUCuUCGAGCgGCUGCCGUGcuag -5'
24121 3' -54.4 NC_005263.2 + 1397 0.67 0.67352
Target:  5'- aGCGGGuucgauuauuGCUUGUCGuCGGCGCGcgCc -3'
miRNA:   3'- -CGUUCuu--------CGAGCGGCuGCCGUGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 25348 0.67 0.662389
Target:  5'- gGCAGGucGCcaUCGCguuccuCGGCGGCcUGAUCg -3'
miRNA:   3'- -CGUUCuuCG--AGCG------GCUGCCGuGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 6831 0.67 0.67352
Target:  5'- uGCGGGAAGCgcagCGaCGGCGaCACGAc- -3'
miRNA:   3'- -CGUUCUUCGa---GCgGCUGCcGUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.