miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 3' -54.4 NC_005263.2 + 10174 0.68 0.606512
Target:  5'- cGCAcc-GGCU-GCCGGCGGCGCGc-- -3'
miRNA:   3'- -CGUucuUCGAgCGGCUGCCGUGCuag -5'
24121 3' -54.4 NC_005263.2 + 10193 0.7 0.476674
Target:  5'- aGCAGGccgaagcGCUCGCCGGCcucgGGCucgaguccagacGCGAUCg -3'
miRNA:   3'- -CGUUCuu-----CGAGCGGCUG----CCG------------UGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 10419 0.66 0.694548
Target:  5'- cGCAGGAaaggucggacAGCUCGuCCGAUucaaucaGGU-CGAUCg -3'
miRNA:   3'- -CGUUCU----------UCGAGC-GGCUG-------CCGuGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 14956 0.74 0.282296
Target:  5'- uGCAAGgcGCcgCGCCauggcuGGCGGCAgCGAUCu -3'
miRNA:   3'- -CGUUCuuCGa-GCGG------CUGCCGU-GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 15023 0.68 0.606512
Target:  5'- cGCAAGcAGaucauUCGCCGACcaaGGCGuacCGAUCa -3'
miRNA:   3'- -CGUUCuUCg----AGCGGCUG---CCGU---GCUAG- -5'
24121 3' -54.4 NC_005263.2 + 15207 0.67 0.640051
Target:  5'- aGCGGGccGCcgaCGCCGACGcCACGAa- -3'
miRNA:   3'- -CGUUCuuCGa--GCGGCUGCcGUGCUag -5'
24121 3' -54.4 NC_005263.2 + 16394 0.66 0.717525
Target:  5'- ---uGAAGCUgGCCGGCaucgcgGGUGCGGUa -3'
miRNA:   3'- cguuCUUCGAgCGGCUG------CCGUGCUAg -5'
24121 3' -54.4 NC_005263.2 + 17208 0.68 0.606512
Target:  5'- -uGGGAcaAGCUgGCCGGCaGCAaGAUCg -3'
miRNA:   3'- cgUUCU--UCGAgCGGCUGcCGUgCUAG- -5'
24121 3' -54.4 NC_005263.2 + 17296 0.69 0.551189
Target:  5'- gGCGcGAGGCagUCGCC-ACGGCGCGcgaauUCg -3'
miRNA:   3'- -CGUuCUUCG--AGCGGcUGCCGUGCu----AG- -5'
24121 3' -54.4 NC_005263.2 + 17379 0.66 0.717525
Target:  5'- cGCGuGAAGCUgucUGCCGgcGCGGC-CGcgCg -3'
miRNA:   3'- -CGUuCUUCGA---GCGGC--UGCCGuGCuaG- -5'
24121 3' -54.4 NC_005263.2 + 17733 0.7 0.456292
Target:  5'- cGCAuGggGCUcgcacucggCGCCGGCGGCagcGCGGc- -3'
miRNA:   3'- -CGUuCuuCGA---------GCGGCUGCCG---UGCUag -5'
24121 3' -54.4 NC_005263.2 + 18636 0.66 0.739052
Target:  5'- gGCAacccGGgcGC-CGCUGGCGGUACGc-- -3'
miRNA:   3'- -CGU----UCuuCGaGCGGCUGCCGUGCuag -5'
24121 3' -54.4 NC_005263.2 + 18746 0.66 0.706625
Target:  5'- cGCcAGAucGGCgcgaUCGuaGGCGGCGCGGUg -3'
miRNA:   3'- -CGuUCU--UCG----AGCggCUGCCGUGCUAg -5'
24121 3' -54.4 NC_005263.2 + 19475 0.66 0.739052
Target:  5'- gGCAGGAcguGCUcaCGCCGAucaCGaGCgauACGAUCa -3'
miRNA:   3'- -CGUUCUu--CGA--GCGGCU---GC-CG---UGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 19742 0.66 0.728338
Target:  5'- uGCGAucGGCgcuggcgCGCUGGCGGCGCu--- -3'
miRNA:   3'- -CGUUcuUCGa------GCGGCUGCCGUGcuag -5'
24121 3' -54.4 NC_005263.2 + 20122 0.69 0.518718
Target:  5'- cGCAGGGuuacGGCaaGCgCGACGGUACGGccgUCg -3'
miRNA:   3'- -CGUUCU----UCGagCG-GCUGCCGUGCU---AG- -5'
24121 3' -54.4 NC_005263.2 + 20856 0.76 0.205696
Target:  5'- -gGAGAccuaacGCUaucgGCCGGCGGCGCGAUCa -3'
miRNA:   3'- cgUUCUu-----CGAg---CGGCUGCCGUGCUAG- -5'
24121 3' -54.4 NC_005263.2 + 20892 0.67 0.684611
Target:  5'- gGCAGGAGGCgcacgggaugaCGCCGgAUGGCguguACgGAUCg -3'
miRNA:   3'- -CGUUCUUCGa----------GCGGC-UGCCG----UG-CUAG- -5'
24121 3' -54.4 NC_005263.2 + 21580 0.68 0.595366
Target:  5'- cGCGu---GCUCGCCGcCGGCGuCGAc- -3'
miRNA:   3'- -CGUucuuCGAGCGGCuGCCGU-GCUag -5'
24121 3' -54.4 NC_005263.2 + 22139 0.68 0.628865
Target:  5'- cGUucGAGGCauUCcUCGACGGCGCGAcgcUCg -3'
miRNA:   3'- -CGuuCUUCG--AGcGGCUGCCGUGCU---AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.