Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24121 | 3' | -54.4 | NC_005263.2 | + | 6831 | 0.67 | 0.67352 |
Target: 5'- uGCGGGAAGCgcagCGaCGGCGaCACGAc- -3' miRNA: 3'- -CGUUCUUCGa---GCgGCUGCcGUGCUag -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 8035 | 0.66 | 0.706625 |
Target: 5'- uGCGAGgcGUccgCGCCGugGcgccGCGCGAg- -3' miRNA: 3'- -CGUUCuuCGa--GCGGCugC----CGUGCUag -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 46148 | 0.66 | 0.70334 |
Target: 5'- uGCAgcAGAucgacgcgguugccGGCgUCGCCGGugcCGGCGCGcUCg -3' miRNA: 3'- -CGU--UCU--------------UCG-AGCGGCU---GCCGUGCuAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 6235 | 0.66 | 0.69565 |
Target: 5'- uGCccGAucGCUCGCgGccaGGCGCGGUCg -3' miRNA: 3'- -CGuuCUu-CGAGCGgCug-CCGUGCUAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 24918 | 0.66 | 0.69565 |
Target: 5'- uGCAGGggGCucuaacccguUCGgUGGCGGCggacgGCGGUg -3' miRNA: 3'- -CGUUCuuCG----------AGCgGCUGCCG-----UGCUAg -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 9358 | 0.66 | 0.69565 |
Target: 5'- cGguGaAGGCgagCGCCGGCGGCuGCGGg- -3' miRNA: 3'- -CguUcUUCGa--GCGGCUGCCG-UGCUag -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 37923 | 0.66 | 0.69565 |
Target: 5'- aGCGGGcgcAGGCgCGCCGcCGGCAgcCGGUg -3' miRNA: 3'- -CGUUC---UUCGaGCGGCuGCCGU--GCUAg -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 2478 | 0.67 | 0.684611 |
Target: 5'- uCGAGGAGCgccucaUCGuaGACGugauGCACGAUCu -3' miRNA: 3'- cGUUCUUCG------AGCggCUGC----CGUGCUAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 38081 | 0.67 | 0.67352 |
Target: 5'- uCGAGcAGCUCGgCGGCGGUGCu--- -3' miRNA: 3'- cGUUCuUCGAGCgGCUGCCGUGcuag -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 28049 | 0.66 | 0.706625 |
Target: 5'- aGCAucaguuAGcAGCgCGUCGcacucaacgcGCGGCACGAUCc -3' miRNA: 3'- -CGU------UCuUCGaGCGGC----------UGCCGUGCUAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 18746 | 0.66 | 0.706625 |
Target: 5'- cGCcAGAucGGCgcgaUCGuaGGCGGCGCGGUg -3' miRNA: 3'- -CGuUCU--UCG----AGCggCUGCCGUGCUAg -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 36805 | 0.66 | 0.707719 |
Target: 5'- gGCGAGGccauaaauugccgcuGCUCGUCG-C-GCACGAUCa -3' miRNA: 3'- -CGUUCUu--------------CGAGCGGCuGcCGUGCUAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 32998 | 0.66 | 0.739052 |
Target: 5'- uGCAGGAcgGGCUCGa-GAacUGGUACGAcUCg -3' miRNA: 3'- -CGUUCU--UCGAGCggCU--GCCGUGCU-AG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 19475 | 0.66 | 0.739052 |
Target: 5'- gGCAGGAcguGCUcaCGCCGAucaCGaGCgauACGAUCa -3' miRNA: 3'- -CGUUCUu--CGA--GCGGCU---GC-CG---UGCUAG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 43920 | 0.66 | 0.728338 |
Target: 5'- gGCGcAGAAGCacaCGCCGcuGCaGCACGAg- -3' miRNA: 3'- -CGU-UCUUCGa--GCGGC--UGcCGUGCUag -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 1269 | 0.66 | 0.728338 |
Target: 5'- cCGGGuaAGGCUCaGUCGgaGCGGCGCGAa- -3' miRNA: 3'- cGUUC--UUCGAG-CGGC--UGCCGUGCUag -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 17379 | 0.66 | 0.717525 |
Target: 5'- cGCGuGAAGCUgucUGCCGgcGCGGC-CGcgCg -3' miRNA: 3'- -CGUuCUUCGA---GCGGC--UGCCGuGCuaG- -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 29063 | 0.66 | 0.717525 |
Target: 5'- aGCAcGAcgcGGCcCGCU-ACGGCGCGAUa -3' miRNA: 3'- -CGUuCU---UCGaGCGGcUGCCGUGCUAg -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 16394 | 0.66 | 0.717525 |
Target: 5'- ---uGAAGCUgGCCGGCaucgcgGGUGCGGUa -3' miRNA: 3'- cguuCUUCGAgCGGCUG------CCGUGCUAg -5' |
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24121 | 3' | -54.4 | NC_005263.2 | + | 43759 | 0.66 | 0.714264 |
Target: 5'- aGCAGGAgaucguuaAGUgaauuugcacgauaUCGUgcGCGGCGCGAUCa -3' miRNA: 3'- -CGUUCU--------UCG--------------AGCGgcUGCCGUGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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