miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24122 3' -55.2 NC_005263.2 + 29081 0.66 0.739067
Target:  5'- aCGGcgcGAUagGCG-CGGUucAGCGACGgCGg -3'
miRNA:   3'- -GCC---UUAagCGCuGCCA--UCGCUGCgGC- -5'
24122 3' -55.2 NC_005263.2 + 26193 0.66 0.739067
Target:  5'- gCGGccg-CGCGGCGGccgcgcgauGCGGCgGCCGu -3'
miRNA:   3'- -GCCuuaaGCGCUGCCau-------CGCUG-CGGC- -5'
24122 3' -55.2 NC_005263.2 + 25006 0.66 0.739067
Target:  5'- cCGGGuaUgGCuGCGGUGGCgGugGCUGc -3'
miRNA:   3'- -GCCUuaAgCGcUGCCAUCG-CugCGGC- -5'
24122 3' -55.2 NC_005263.2 + 41358 0.66 0.739067
Target:  5'- cCGGcg--CGCGAUGGacGUGACGCgCGa -3'
miRNA:   3'- -GCCuuaaGCGCUGCCauCGCUGCG-GC- -5'
24122 3' -55.2 NC_005263.2 + 33968 0.66 0.739067
Target:  5'- gGcGAGUgUGCGGCGaaucGUAGCGGCgagGCCGg -3'
miRNA:   3'- gC-CUUAaGCGCUGC----CAUCGCUG---CGGC- -5'
24122 3' -55.2 NC_005263.2 + 6981 0.66 0.739067
Target:  5'- cCGGAucUCGCGGCGaaGUucGGCGAugaCGUCGu -3'
miRNA:   3'- -GCCUuaAGCGCUGC--CA--UCGCU---GCGGC- -5'
24122 3' -55.2 NC_005263.2 + 20049 0.66 0.72858
Target:  5'- uGGA--UCGCGGCGGUcguucAGCacACGCuCGa -3'
miRNA:   3'- gCCUuaAGCGCUGCCA-----UCGc-UGCG-GC- -5'
24122 3' -55.2 NC_005263.2 + 45699 0.66 0.72858
Target:  5'- gCGGAugugUCGCGGCGa-AGCGugGUg- -3'
miRNA:   3'- -GCCUua--AGCGCUGCcaUCGCugCGgc -5'
24122 3' -55.2 NC_005263.2 + 26610 0.66 0.725415
Target:  5'- uGGGA-UCGagcgguaauCGACGGUgcgccggauuugccAGUGGCGCCGc -3'
miRNA:   3'- gCCUUaAGC---------GCUGCCA--------------UCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 907 0.66 0.717998
Target:  5'- aGGAGUguuggucggcaUCGCGuCcucGUAGCGuGCGCCGc -3'
miRNA:   3'- gCCUUA-----------AGCGCuGc--CAUCGC-UGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 44887 0.66 0.707331
Target:  5'- cCGGcGUcaUCGgGGCGGgcGGCGGCcggGCCGg -3'
miRNA:   3'- -GCCuUA--AGCgCUGCCa-UCGCUG---CGGC- -5'
24122 3' -55.2 NC_005263.2 + 24535 0.66 0.707331
Target:  5'- uCGGGcaacgGCGGCGGcgcgGGCGGCGgCGg -3'
miRNA:   3'- -GCCUuaag-CGCUGCCa---UCGCUGCgGC- -5'
24122 3' -55.2 NC_005263.2 + 11281 0.66 0.70626
Target:  5'- cCGGAAUgaucgugCGCGACGaGcAGCGGCaauuuauggccucGCCa -3'
miRNA:   3'- -GCCUUAa------GCGCUGC-CaUCGCUG-------------CGGc -5'
24122 3' -55.2 NC_005263.2 + 12004 0.66 0.696592
Target:  5'- aCGGGccagcucgUCGUaucgGACGGUAGCGuaACGaCCGg -3'
miRNA:   3'- -GCCUua------AGCG----CUGCCAUCGC--UGC-GGC- -5'
24122 3' -55.2 NC_005263.2 + 8260 0.66 0.695514
Target:  5'- cCGGGuaugcgcGUUCG-GACGGccacagcgcgAGCGGCGUCGg -3'
miRNA:   3'- -GCCU-------UAAGCgCUGCCa---------UCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 30173 0.67 0.68579
Target:  5'- gCGGGucGUUCGCuacGACGGUcaCGGgGCCGu -3'
miRNA:   3'- -GCCU--UAAGCG---CUGCCAucGCUgCGGC- -5'
24122 3' -55.2 NC_005263.2 + 9347 0.67 0.68579
Target:  5'- gCGGA--UCGUauCGGUgaaGGCGAgCGCCGg -3'
miRNA:   3'- -GCCUuaAGCGcuGCCA---UCGCU-GCGGC- -5'
24122 3' -55.2 NC_005263.2 + 25078 0.67 0.68579
Target:  5'- cCGGcAAUUCGgGugGcGcUGGC-ACGCCGg -3'
miRNA:   3'- -GCC-UUAAGCgCugC-C-AUCGcUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 40058 0.67 0.674939
Target:  5'- aCGGAAcucgCGCGGCGccacGgcGCGgACGCCu -3'
miRNA:   3'- -GCCUUaa--GCGCUGC----CauCGC-UGCGGc -5'
24122 3' -55.2 NC_005263.2 + 1593 0.67 0.674939
Target:  5'- uGGAcgUgccgagcagCGCGGCGGacacuuCGACGCCGa -3'
miRNA:   3'- gCCUuaA---------GCGCUGCCauc---GCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.