miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24122 5' -49.8 NC_005263.2 + 24952 0.66 0.943724
Target:  5'- cGGCGGUGcgCGGUU---CGCAGAUCGg -3'
miRNA:   3'- -CCGCUACaaGUUAGuccGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 28963 0.66 0.943724
Target:  5'- cGGauCGGUGUcgCGGaauUCGGGCGCAuGCUGc -3'
miRNA:   3'- -CC--GCUACAa-GUU---AGUCCGCGUuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 40948 0.66 0.943724
Target:  5'- cGGCGAUGgccgcgCAAUaGGGuCGCuugacauAGCCGu -3'
miRNA:   3'- -CCGCUACaa----GUUAgUCC-GCGu------UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 5251 0.66 0.943724
Target:  5'- aGGCGccGUcaUCAG-CGGGCGguG-CCGg -3'
miRNA:   3'- -CCGCuaCA--AGUUaGUCCGCguUuGGC- -5'
24122 5' -49.8 NC_005263.2 + 27527 0.66 0.938505
Target:  5'- cGCGGUGcccgUCGG-CAcGGCcgGCAGGCCGg -3'
miRNA:   3'- cCGCUACa---AGUUaGU-CCG--CGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 42775 0.66 0.932986
Target:  5'- cGGCGgcGUgaCGAUCcagcgcgaAGGCGCGAaagacccgaacGCCGa -3'
miRNA:   3'- -CCGCuaCAa-GUUAG--------UCCGCGUU-----------UGGC- -5'
24122 5' -49.8 NC_005263.2 + 19774 0.66 0.932986
Target:  5'- uGGCcGUGUgggCAAUCGuuCGCAAGCUGa -3'
miRNA:   3'- -CCGcUACAa--GUUAGUccGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 1894 0.66 0.927164
Target:  5'- uGGCGggGUUgcCGAUCAGGaaGUAccAGCCGc -3'
miRNA:   3'- -CCGCuaCAA--GUUAGUCCg-CGU--UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 46788 0.67 0.907886
Target:  5'- cGUGuucGUGUUCAAUCAGcUGCAAuucacGCCGa -3'
miRNA:   3'- cCGC---UACAAGUUAGUCcGCGUU-----UGGC- -5'
24122 5' -49.8 NC_005263.2 + 35540 0.67 0.907886
Target:  5'- cGGCGgcGcgCGggCGGGCGCuacggcGCCGc -3'
miRNA:   3'- -CCGCuaCaaGUuaGUCCGCGuu----UGGC- -5'
24122 5' -49.8 NC_005263.2 + 10629 0.67 0.90581
Target:  5'- cGGCGccGUUCGucacgccgCAGuacacauggacgccGCGCAGACCGc -3'
miRNA:   3'- -CCGCuaCAAGUua------GUC--------------CGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 15313 0.67 0.893542
Target:  5'- aGCGAgcUGcgCG---AGGCGCGGGCCGa -3'
miRNA:   3'- cCGCU--ACaaGUuagUCCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 8853 0.67 0.885933
Target:  5'- aGGCGgcGcgCG---GGGCGCGAGCCc -3'
miRNA:   3'- -CCGCuaCaaGUuagUCCGCGUUUGGc -5'
24122 5' -49.8 NC_005263.2 + 27726 0.67 0.885933
Target:  5'- uGGCGAguUGUaCGguGUCGGcGCGCGAucaGCCa -3'
miRNA:   3'- -CCGCU--ACAaGU--UAGUC-CGCGUU---UGGc -5'
24122 5' -49.8 NC_005263.2 + 37339 0.67 0.885933
Target:  5'- gGGCGAUGcguucCAGUCGGuCGC-GGCCGu -3'
miRNA:   3'- -CCGCUACaa---GUUAGUCcGCGuUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 7163 0.67 0.885933
Target:  5'- uGGUGcAUGcgaUCuuUCAuGCGCAAGCCGg -3'
miRNA:   3'- -CCGC-UACa--AGuuAGUcCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 31334 0.67 0.885933
Target:  5'- cGGCGAUacgccggCGgccGUCAGGCGCGAcuCCa -3'
miRNA:   3'- -CCGCUAcaa----GU---UAGUCCGCGUUu-GGc -5'
24122 5' -49.8 NC_005263.2 + 44439 0.67 0.883594
Target:  5'- aGGCGAUGgaagaccugaAGGCGUucGCCGa -3'
miRNA:   3'- -CCGCUACaaguuag---UCCGCGuuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 40009 0.68 0.87804
Target:  5'- cGGCGAUGUcCGAUCuGaGCaagaCGAACCa -3'
miRNA:   3'- -CCGCUACAaGUUAGuC-CGc---GUUUGGc -5'
24122 5' -49.8 NC_005263.2 + 1397 0.68 0.87804
Target:  5'- aGCGG-GUUCGAUUAuugcuugucgucGGCGCGcGCCGc -3'
miRNA:   3'- cCGCUaCAAGUUAGU------------CCGCGUuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.