Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24122 | 5' | -49.8 | NC_005263.2 | + | 27527 | 0.66 | 0.938505 |
Target: 5'- cGCGGUGcccgUCGG-CAcGGCcgGCAGGCCGg -3' miRNA: 3'- cCGCUACa---AGUUaGU-CCG--CGUUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 27726 | 0.67 | 0.885933 |
Target: 5'- uGGCGAguUGUaCGguGUCGGcGCGCGAucaGCCa -3' miRNA: 3'- -CCGCU--ACAaGU--UAGUC-CGCGUU---UGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 28963 | 0.66 | 0.943724 |
Target: 5'- cGGauCGGUGUcgCGGaauUCGGGCGCAuGCUGc -3' miRNA: 3'- -CC--GCUACAa-GUU---AGUCCGCGUuUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 28989 | 0.7 | 0.764288 |
Target: 5'- cGGCGAUGcgC--UC-GGCGCGgccGACCGg -3' miRNA: 3'- -CCGCUACaaGuuAGuCCGCGU---UUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 29974 | 0.69 | 0.815482 |
Target: 5'- cGGCGGgcaGcgCGAUCAGcGCGUAGaacucgGCCGg -3' miRNA: 3'- -CCGCUa--CaaGUUAGUC-CGCGUU------UGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 30269 | 0.69 | 0.805617 |
Target: 5'- cGGCGAagcgcUGcgCAAUCGGGcCGCGcgcggcauccucGGCCGc -3' miRNA: 3'- -CCGCU-----ACaaGUUAGUCC-GCGU------------UUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 31334 | 0.67 | 0.885933 |
Target: 5'- cGGCGAUacgccggCGgccGUCAGGCGCGAcuCCa -3' miRNA: 3'- -CCGCUAcaa----GU---UAGUCCGCGUUu-GGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 33286 | 0.69 | 0.805617 |
Target: 5'- cGGCGAUGUacCAG-CAGGUGCcgcuguCCGa -3' miRNA: 3'- -CCGCUACAa-GUUaGUCCGCGuuu---GGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 33664 | 0.71 | 0.698104 |
Target: 5'- aGCGcgGagUCGAUgCGGGCGCGAAUCu -3' miRNA: 3'- cCGCuaCa-AGUUA-GUCCGCGUUUGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 34458 | 0.7 | 0.779066 |
Target: 5'- cGCGGUGcgCAcgaccgucauccaugAUCAGGCGUucGGCCGc -3' miRNA: 3'- cCGCUACaaGU---------------UAGUCCGCGu-UUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 35540 | 0.67 | 0.907886 |
Target: 5'- cGGCGgcGcgCGggCGGGCGCuacggcGCCGc -3' miRNA: 3'- -CCGCuaCaaGUuaGUCCGCGuu----UGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 37339 | 0.67 | 0.885933 |
Target: 5'- gGGCGAUGcguucCAGUCGGuCGC-GGCCGu -3' miRNA: 3'- -CCGCUACaa---GUUAGUCcGCGuUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 39692 | 0.68 | 0.858844 |
Target: 5'- cGCGAUGgggCGAgcgCGagcuggaaauggccGGCGCGGGCCGc -3' miRNA: 3'- cCGCUACaa-GUUa--GU--------------CCGCGUUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 40009 | 0.68 | 0.87804 |
Target: 5'- cGGCGAUGUcCGAUCuGaGCaagaCGAACCa -3' miRNA: 3'- -CCGCUACAaGUUAGuC-CGc---GUUUGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 40948 | 0.66 | 0.943724 |
Target: 5'- cGGCGAUGgccgcgCAAUaGGGuCGCuugacauAGCCGu -3' miRNA: 3'- -CCGCUACaa----GUUAgUCC-GCGu------UUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 41671 | 0.71 | 0.686753 |
Target: 5'- uGGCGGcagaUC-GUCGGGCGCGGACUGc -3' miRNA: 3'- -CCGCUaca-AGuUAGUCCGCGUUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 42775 | 0.66 | 0.932986 |
Target: 5'- cGGCGgcGUgaCGAUCcagcgcgaAGGCGCGAaagacccgaacGCCGa -3' miRNA: 3'- -CCGCuaCAa-GUUAG--------UCCGCGUU-----------UGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 42929 | 1.12 | 0.002214 |
Target: 5'- aGGCGAUGUUCAAUCAGGCGCAAACCGc -3' miRNA: 3'- -CCGCUACAAGUUAGUCCGCGUUUGGC- -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 44283 | 0.69 | 0.794535 |
Target: 5'- uGGgGAuggguuacgucccUGUUCGAUCcGGCGCucGCCu -3' miRNA: 3'- -CCgCU-------------ACAAGUUAGuCCGCGuuUGGc -5' |
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24122 | 5' | -49.8 | NC_005263.2 | + | 44439 | 0.67 | 0.883594 |
Target: 5'- aGGCGAUGgaagaccugaAGGCGUucGCCGa -3' miRNA: 3'- -CCGCUACaaguuag---UCCGCGuuUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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