Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 47294 | 0.66 | 0.786588 |
Target: 5'- cCGAAGCGcAGUccGCUGU-CGACGGACu -3' miRNA: 3'- -GCUUCGCuUCAc-CGACGcGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 45839 | 0.67 | 0.733588 |
Target: 5'- cCGAcGGCGAAcgcGCUGCGCu-CGAACa -3' miRNA: 3'- -GCU-UCGCUUcacCGACGCGuuGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 44841 | 0.67 | 0.763706 |
Target: 5'- gCGAGGCGAuacucgacgccUGuCUGCGCGGCGAucGCg -3' miRNA: 3'- -GCUUCGCUuc---------ACcGACGCGUUGCU--UG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 42642 | 1.11 | 0.00109 |
Target: 5'- cCGAAGCGAAGUGGCUGCGCAACGAACa -3' miRNA: 3'- -GCUUCGCUUCACCGACGCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 42118 | 0.74 | 0.378374 |
Target: 5'- aCGAggauAGCGucGU-GCUGCGCGACGAGg -3' miRNA: 3'- -GCU----UCGCuuCAcCGACGCGUUGCUUg -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 41553 | 0.69 | 0.643752 |
Target: 5'- gCGgcGCGccGUGGCgGCGauGCGAGCu -3' miRNA: 3'- -GCuuCGCuuCACCGaCGCguUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 41342 | 0.69 | 0.655145 |
Target: 5'- aCGAGGCcGAGcucgcccGGC-GCGCGAUGGACg -3' miRNA: 3'- -GCUUCGcUUCa------CCGaCGCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 39515 | 0.7 | 0.564276 |
Target: 5'- -aAGGCGAAGaUGGaagcgcgcgGCGUAACGGACg -3' miRNA: 3'- gcUUCGCUUC-ACCga-------CGCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 38349 | 0.67 | 0.776283 |
Target: 5'- gGAuGCGAAGUcGG-UGCGCAccGCGAu- -3' miRNA: 3'- gCUuCGCUUCA-CCgACGCGU--UGCUug -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 37975 | 0.68 | 0.700373 |
Target: 5'- cCGGcuGGCGcugaAGGUGGCg--GCAACGAACu -3' miRNA: 3'- -GCU--UCGC----UUCACCGacgCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 37380 | 0.72 | 0.446039 |
Target: 5'- uCGAGucuGCGucGcccUGGCUGCGCGACGuGCa -3' miRNA: 3'- -GCUU---CGCuuC---ACCGACGCGUUGCuUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 36497 | 0.67 | 0.776283 |
Target: 5'- uCGAAgGCGAAGU-GCUGCGCcACu--- -3' miRNA: 3'- -GCUU-CGCUUCAcCGACGCGuUGcuug -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 35361 | 0.7 | 0.597037 |
Target: 5'- -cAGGUGAuccgcccugaucaGGUGGCgGCGCGGCuGAACa -3' miRNA: 3'- gcUUCGCU-------------UCACCGaCGCGUUG-CUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 35242 | 0.66 | 0.789646 |
Target: 5'- uCGgcGCGGucgaccccucgaucaAGUGGCaguggaaUGCGCugcGCGAACu -3' miRNA: 3'- -GCuuCGCU---------------UCACCG-------ACGCGu--UGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 33989 | 0.68 | 0.700373 |
Target: 5'- aGcGGCGAGGccggccguguUGGCUGCGUcGCGGcgcGCg -3' miRNA: 3'- gCuUCGCUUC----------ACCGACGCGuUGCU---UG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 33319 | 0.68 | 0.689142 |
Target: 5'- aCGAacGGCaaGAGGUaGGCgUGCGCGuCGGGCa -3' miRNA: 3'- -GCU--UCG--CUUCA-CCG-ACGCGUuGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 32001 | 0.73 | 0.406526 |
Target: 5'- uGuGGCgGGAGUGGCacugUGgGCGGCGAGCg -3' miRNA: 3'- gCuUCG-CUUCACCG----ACgCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 31022 | 0.68 | 0.689142 |
Target: 5'- uGcGGCGAGGcgcGGCgUGCGCugcuCGAGCa -3' miRNA: 3'- gCuUCGCUUCa--CCG-ACGCGuu--GCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 30265 | 0.71 | 0.530907 |
Target: 5'- uCGucGGCGAAGc-GCUGCGCAAuCGGGCc -3' miRNA: 3'- -GCu-UCGCUUCacCGACGCGUU-GCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 29605 | 0.67 | 0.733588 |
Target: 5'- cCGAucGCGAGGc-GUUGCGCuuCGGACg -3' miRNA: 3'- -GCUu-CGCUUCacCGACGCGuuGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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