miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24128 3' -51 NC_005263.2 + 45532 0.66 0.88766
Target:  5'- --uGcCUGGACGGcCGUgAUUGCCGAu- -3'
miRNA:   3'- uuuC-GACUUGCU-GCAgUAGCGGCUug -5'
24128 3' -51 NC_005263.2 + 45241 0.66 0.88766
Target:  5'- --cGCU--GCGACGUCGuUCG-CGAACg -3'
miRNA:   3'- uuuCGAcuUGCUGCAGU-AGCgGCUUG- -5'
24128 3' -51 NC_005263.2 + 6892 0.66 0.880599
Target:  5'- uAAAGUUGcggccCGACGUCAgaucguacaccuucgCGUCGAACa -3'
miRNA:   3'- -UUUCGACuu---GCUGCAGUa--------------GCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 39335 0.66 0.8798
Target:  5'- --cGCgGGcCGGCGUCAUCcuGCCGcGCa -3'
miRNA:   3'- uuuCGaCUuGCUGCAGUAG--CGGCuUG- -5'
24128 3' -51 NC_005263.2 + 39092 0.66 0.87166
Target:  5'- uGAGCcGGACGGCGaguacgcgcgacUCGUgCGCCGuGCg -3'
miRNA:   3'- uUUCGaCUUGCUGC------------AGUA-GCGGCuUG- -5'
24128 3' -51 NC_005263.2 + 40215 0.66 0.87166
Target:  5'- gGAAGCaUGGGCGA--UCAUCcGCCGAu- -3'
miRNA:   3'- -UUUCG-ACUUGCUgcAGUAG-CGGCUug -5'
24128 3' -51 NC_005263.2 + 20135 0.66 0.87166
Target:  5'- cAAGCgcgacgGuACGGcCGUCG-CGCCGGGCa -3'
miRNA:   3'- uUUCGa-----CuUGCU-GCAGUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 25551 0.66 0.863245
Target:  5'- cGAGUUGAucgcgagcGCGACGUCGgcguccgCGCCGc-- -3'
miRNA:   3'- uUUCGACU--------UGCUGCAGUa------GCGGCuug -5'
24128 3' -51 NC_005263.2 + 26515 0.66 0.863245
Target:  5'- --uGUUGcgcGCGGCGUCGaCGCCGGcgGCg -3'
miRNA:   3'- uuuCGACu--UGCUGCAGUaGCGGCU--UG- -5'
24128 3' -51 NC_005263.2 + 41781 0.67 0.845627
Target:  5'- -cGGCgcGGGCGAC-UCGcgCGCCGGACu -3'
miRNA:   3'- uuUCGa-CUUGCUGcAGUa-GCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 31440 0.67 0.845627
Target:  5'- --uGCUGAAUGu--UCA-CGCCGAACg -3'
miRNA:   3'- uuuCGACUUGCugcAGUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 13242 0.67 0.845627
Target:  5'- cAAGUgGAAUuACGcauuuUCGUCGCCGGACg -3'
miRNA:   3'- uUUCGaCUUGcUGC-----AGUAGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 28519 0.67 0.836443
Target:  5'- cGAAGUUGAACuuCGguUCGaCGCCGGGCu -3'
miRNA:   3'- -UUUCGACUUGcuGC--AGUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 17170 0.67 0.836443
Target:  5'- aGAAGCcGAaugcgcagcucGCGGCGUacgcCGUCGCCGcGCu -3'
miRNA:   3'- -UUUCGaCU-----------UGCUGCA----GUAGCGGCuUG- -5'
24128 3' -51 NC_005263.2 + 33587 0.67 0.836443
Target:  5'- aAAAGCggcGAACGGCG-CcgCGCUGAu- -3'
miRNA:   3'- -UUUCGa--CUUGCUGCaGuaGCGGCUug -5'
24128 3' -51 NC_005263.2 + 39266 0.67 0.836443
Target:  5'- cGAGCUGcgcGCGAUGcuugaucgCA-CGCCGAGCg -3'
miRNA:   3'- uUUCGACu--UGCUGCa-------GUaGCGGCUUG- -5'
24128 3' -51 NC_005263.2 + 14463 0.67 0.827021
Target:  5'- cGAGCcGAGCGGCGgCA-CGCCuucGAGCa -3'
miRNA:   3'- uUUCGaCUUGCUGCaGUaGCGG---CUUG- -5'
24128 3' -51 NC_005263.2 + 19829 0.67 0.827021
Target:  5'- cGAAcCUGAccuACGACGUC-UCGCUGcAGCg -3'
miRNA:   3'- -UUUcGACU---UGCUGCAGuAGCGGC-UUG- -5'
24128 3' -51 NC_005263.2 + 27908 0.67 0.827021
Target:  5'- cAAAGCacucGACGGCGgcgCGUCGCCcGGCg -3'
miRNA:   3'- -UUUCGac--UUGCUGCa--GUAGCGGcUUG- -5'
24128 3' -51 NC_005263.2 + 23860 0.68 0.797446
Target:  5'- cGAAGCUG-GCGGCGUac-CGCCGcaaGGCg -3'
miRNA:   3'- -UUUCGACuUGCUGCAguaGCGGC---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.