miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24128 5' -55 NC_005263.2 + 34361 0.65 0.752918
Target:  5'- -cAUCCGGccuggccGCCGGCGguaaCGcCGCGa -3'
miRNA:   3'- caUAGGCCuu-----UGGCCGCaa--GC-GCGCc -5'
24128 5' -55 NC_005263.2 + 21853 0.65 0.752918
Target:  5'- -gAUCaGGucGCC-GCGUUCGCGaCGGc -3'
miRNA:   3'- caUAGgCCuuUGGcCGCAAGCGC-GCC- -5'
24128 5' -55 NC_005263.2 + 24818 0.66 0.732065
Target:  5'- cGUAUUCGGccuauacGGCCGGCGgcaaCG-GCGGu -3'
miRNA:   3'- -CAUAGGCCu------UUGGCCGCaa--GCgCGCC- -5'
24128 5' -55 NC_005263.2 + 20099 0.66 0.732065
Target:  5'- -cGUCUGGucGACCaGCGUcgcCGCGCaGGg -3'
miRNA:   3'- caUAGGCCu-UUGGcCGCAa--GCGCG-CC- -5'
24128 5' -55 NC_005263.2 + 8825 0.66 0.732065
Target:  5'- ---gCCGGccGCuCGGCGUgcgaucaagcaUCGCGCGc -3'
miRNA:   3'- cauaGGCCuuUG-GCCGCA-----------AGCGCGCc -5'
24128 5' -55 NC_005263.2 + 40054 0.66 0.732065
Target:  5'- -gAUCaCGGAAcucGCgCGGCGccacgGCGCGGa -3'
miRNA:   3'- caUAG-GCCUU---UG-GCCGCaag--CGCGCC- -5'
24128 5' -55 NC_005263.2 + 22661 0.66 0.710813
Target:  5'- cUAUCCGcAAuaucCCGuGCgGUUCGUGCGGc -3'
miRNA:   3'- cAUAGGCcUUu---GGC-CG-CAAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 33400 0.66 0.710813
Target:  5'- cUAUCCGGA--UCGGCGUcgaUCGCcuugaGCGc -3'
miRNA:   3'- cAUAGGCCUuuGGCCGCA---AGCG-----CGCc -5'
24128 5' -55 NC_005263.2 + 9353 0.66 0.709742
Target:  5'- cGUAUCgGuGAAggcgagcGCCGGCGgcugcgggaauUUCaGCGCGGc -3'
miRNA:   3'- -CAUAGgC-CUU-------UGGCCGC-----------AAG-CGCGCC- -5'
24128 5' -55 NC_005263.2 + 1834 0.66 0.709742
Target:  5'- -cGUCCGaGuaccaaagugugcAGGCCGGCGa-CGUGCGGu -3'
miRNA:   3'- caUAGGC-C-------------UUUGGCCGCaaGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 43660 0.66 0.700066
Target:  5'- cUAUCaGcGAAugGCCGGCGgacaacaGCGCGGa -3'
miRNA:   3'- cAUAGgC-CUU--UGGCCGCaag----CGCGCC- -5'
24128 5' -55 NC_005263.2 + 43083 0.66 0.700066
Target:  5'- ---gCCGG--GCCGGCuGUcgaGCGCGGc -3'
miRNA:   3'- cauaGGCCuuUGGCCG-CAag-CGCGCC- -5'
24128 5' -55 NC_005263.2 + 14263 0.67 0.689253
Target:  5'- --uUgCGGcgGCCGGCGcaaCGCGCGc -3'
miRNA:   3'- cauAgGCCuuUGGCCGCaa-GCGCGCc -5'
24128 5' -55 NC_005263.2 + 16777 0.67 0.678385
Target:  5'- ----aCGGccGCCGGCGUaUCGC-CGGa -3'
miRNA:   3'- cauagGCCuuUGGCCGCA-AGCGcGCC- -5'
24128 5' -55 NC_005263.2 + 24469 0.67 0.65653
Target:  5'- -cGUUCGGGuucguGCCGcCGUucaUCGUGCGGa -3'
miRNA:   3'- caUAGGCCUu----UGGCcGCA---AGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 19868 0.67 0.645564
Target:  5'- -gGUCaCGGcGAGCgCGGCGa--GCGCGGc -3'
miRNA:   3'- caUAG-GCC-UUUG-GCCGCaagCGCGCC- -5'
24128 5' -55 NC_005263.2 + 27769 0.67 0.645564
Target:  5'- ---cCCGaGGugCGGCGgcaggccaugcUUCGCGCGGu -3'
miRNA:   3'- cauaGGCcUUugGCCGC-----------AAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 10393 0.67 0.643368
Target:  5'- ---gCCGGGccGGCCGGCGagcggguccggCGCGCGu -3'
miRNA:   3'- cauaGGCCU--UUGGCCGCaa---------GCGCGCc -5'
24128 5' -55 NC_005263.2 + 41766 0.68 0.623604
Target:  5'- -gAUCaacgaGGAGAUCGGCGcgggcgacUCGCGCGc -3'
miRNA:   3'- caUAGg----CCUUUGGCCGCa-------AGCGCGCc -5'
24128 5' -55 NC_005263.2 + 20409 0.68 0.623604
Target:  5'- cUAUgCGGccGCCGGCGccggCGCGCa- -3'
miRNA:   3'- cAUAgGCCuuUGGCCGCaa--GCGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.