miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24128 5' -55 NC_005263.2 + 22887 0.75 0.249746
Target:  5'- ---gCCGGGAucgGCaCGGCGUUCGUGcCGGa -3'
miRNA:   3'- cauaGGCCUU---UG-GCCGCAAGCGC-GCC- -5'
24128 5' -55 NC_005263.2 + 27769 0.67 0.645564
Target:  5'- ---cCCGaGGugCGGCGgcaggccaugcUUCGCGCGGu -3'
miRNA:   3'- cauaGGCcUUugGCCGC-----------AAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 1834 0.66 0.709742
Target:  5'- -cGUCCGaGuaccaaagugugcAGGCCGGCGa-CGUGCGGu -3'
miRNA:   3'- caUAGGC-C-------------UUUGGCCGCaaGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 40054 0.66 0.732065
Target:  5'- -gAUCaCGGAAcucGCgCGGCGccacgGCGCGGa -3'
miRNA:   3'- caUAG-GCCUU---UG-GCCGCaag--CGCGCC- -5'
24128 5' -55 NC_005263.2 + 28297 0.69 0.526168
Target:  5'- -gGUUCGGAAACUGcGCGaUCGCgGCGc -3'
miRNA:   3'- caUAGGCCUUUGGC-CGCaAGCG-CGCc -5'
24128 5' -55 NC_005263.2 + 22185 0.69 0.536772
Target:  5'- ---gCCGGGcgAACCGGUGcUgGCGUGGc -3'
miRNA:   3'- cauaGGCCU--UUGGCCGCaAgCGCGCC- -5'
24128 5' -55 NC_005263.2 + 18748 0.69 0.547449
Target:  5'- ---gCCGGGuuACCGGCGccugcUCGCGCa- -3'
miRNA:   3'- cauaGGCCUu-UGGCCGCa----AGCGCGcc -5'
24128 5' -55 NC_005263.2 + 10177 0.69 0.558192
Target:  5'- ---aCCGGcuGCCGGCGg-CGCGCc- -3'
miRNA:   3'- cauaGGCCuuUGGCCGCaaGCGCGcc -5'
24128 5' -55 NC_005263.2 + 22490 0.68 0.590742
Target:  5'- uGUcgCCGGcggcGGCCGGCGgcggUUCG-GCGGc -3'
miRNA:   3'- -CAuaGGCCu---UUGGCCGC----AAGCgCGCC- -5'
24128 5' -55 NC_005263.2 + 19868 0.67 0.645564
Target:  5'- -gGUCaCGGcGAGCgCGGCGa--GCGCGGc -3'
miRNA:   3'- caUAG-GCC-UUUG-GCCGCaagCGCGCC- -5'
24128 5' -55 NC_005263.2 + 37711 0.68 0.61263
Target:  5'- ---gCCGGAcccgcucgccGGCCGGCccggCGCGUGGc -3'
miRNA:   3'- cauaGGCCU----------UUGGCCGcaa-GCGCGCC- -5'
24128 5' -55 NC_005263.2 + 11931 0.68 0.579847
Target:  5'- aUAUCCGGcAGCCGGCcgguaucgacGUUCGCcucgaGCGc -3'
miRNA:   3'- cAUAGGCCuUUGGCCG----------CAAGCG-----CGCc -5'
24128 5' -55 NC_005263.2 + 12503 0.72 0.362145
Target:  5'- -cAUCCuGcgcGCCGGC-UUCGCGCGGg -3'
miRNA:   3'- caUAGGcCuu-UGGCCGcAAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 20409 0.68 0.623604
Target:  5'- cUAUgCGGccGCCGGCGccggCGCGCa- -3'
miRNA:   3'- cAUAgGCCuuUGGCCGCaa--GCGCGcc -5'
24128 5' -55 NC_005263.2 + 14930 0.7 0.493832
Target:  5'- -aGUCCGGGuuguagccgaucuGAuCCGGauCGUUCaGCGCGGg -3'
miRNA:   3'- caUAGGCCU-------------UU-GGCC--GCAAG-CGCGCC- -5'
24128 5' -55 NC_005263.2 + 32905 0.69 0.558192
Target:  5'- ---cCCGGAAgcgcuuGCCGaCG-UCGCGCGGc -3'
miRNA:   3'- cauaGGCCUU------UGGCcGCaAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 41766 0.68 0.623604
Target:  5'- -gAUCaacgaGGAGAUCGGCGcgggcgacUCGCGCGc -3'
miRNA:   3'- caUAGg----CCUUUGGCCGCa-------AGCGCGCc -5'
24128 5' -55 NC_005263.2 + 24469 0.67 0.65653
Target:  5'- -cGUUCGGGuucguGCCGcCGUucaUCGUGCGGa -3'
miRNA:   3'- caUAGGCCUu----UGGCcGCA---AGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 40895 0.7 0.505207
Target:  5'- --uUCUGGucGCCGGCGaUgGuCGCGGa -3'
miRNA:   3'- cauAGGCCuuUGGCCGCaAgC-GCGCC- -5'
24128 5' -55 NC_005263.2 + 31330 0.69 0.536772
Target:  5'- -cGUCCGGcgauacGCCGGCGgccgUCagGCGCGa -3'
miRNA:   3'- caUAGGCCuu----UGGCCGCa---AG--CGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.