Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24128 | 5' | -55 | NC_005263.2 | + | 12859 | 0.74 | 0.313335 |
Target: 5'- cGUAUUCGauGggGCCGGCGU--GCGUGGu -3' miRNA: 3'- -CAUAGGC--CuuUGGCCGCAagCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 15827 | 0.68 | 0.61263 |
Target: 5'- ---aCCGGcuccGACCuGGCGcgcUUCGCGUGGc -3' miRNA: 3'- cauaGGCCu---UUGG-CCGC---AAGCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 39069 | 0.68 | 0.601673 |
Target: 5'- ----gCGGAcgucguAGCCGGCucgccgUCGCGCGGc -3' miRNA: 3'- cauagGCCU------UUGGCCGca----AGCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 24531 | 0.68 | 0.601673 |
Target: 5'- cGUAUCgGGcaa-CGGCGgcgGCGCGGg -3' miRNA: 3'- -CAUAGgCCuuugGCCGCaagCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 17748 | 0.68 | 0.579847 |
Target: 5'- ---cUCGGc-GCCGGCGgcaGCGCGGc -3' miRNA: 3'- cauaGGCCuuUGGCCGCaagCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 28413 | 0.69 | 0.558192 |
Target: 5'- ---cCCGGAGgcGCCGGCa--CGCGCGu -3' miRNA: 3'- cauaGGCCUU--UGGCCGcaaGCGCGCc -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 3334 | 0.7 | 0.494861 |
Target: 5'- -cGUCUGcGcgccGCCGGCGccgCGCGCGGu -3' miRNA: 3'- caUAGGC-Cuu--UGGCCGCaa-GCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 44381 | 0.7 | 0.494861 |
Target: 5'- -gAUCCGGc--CCGGCGUgCGCGaGGc -3' miRNA: 3'- caUAGGCCuuuGGCCGCAaGCGCgCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 46173 | 0.72 | 0.393868 |
Target: 5'- cGUcgCCGGu-GCCGGCGcgcucgugcagaCGCGCGGc -3' miRNA: 3'- -CAuaGGCCuuUGGCCGCaa----------GCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 10393 | 0.67 | 0.643368 |
Target: 5'- ---gCCGGGccGGCCGGCGagcggguccggCGCGCGu -3' miRNA: 3'- cauaGGCCU--UUGGCCGCaa---------GCGCGCc -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 16777 | 0.67 | 0.678385 |
Target: 5'- ----aCGGccGCCGGCGUaUCGC-CGGa -3' miRNA: 3'- cauagGCCuuUGGCCGCA-AGCGcGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 14263 | 0.67 | 0.689253 |
Target: 5'- --uUgCGGcgGCCGGCGcaaCGCGCGc -3' miRNA: 3'- cauAgGCCuuUGGCCGCaa-GCGCGCc -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 34361 | 0.65 | 0.752918 |
Target: 5'- -cAUCCGGccuggccGCCGGCGguaaCGcCGCGa -3' miRNA: 3'- caUAGGCCuu-----UGGCCGCaa--GC-GCGCc -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 24818 | 0.66 | 0.732065 |
Target: 5'- cGUAUUCGGccuauacGGCCGGCGgcaaCG-GCGGu -3' miRNA: 3'- -CAUAGGCCu------UUGGCCGCaa--GCgCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 20099 | 0.66 | 0.732065 |
Target: 5'- -cGUCUGGucGACCaGCGUcgcCGCGCaGGg -3' miRNA: 3'- caUAGGCCu-UUGGcCGCAa--GCGCG-CC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 8825 | 0.66 | 0.732065 |
Target: 5'- ---gCCGGccGCuCGGCGUgcgaucaagcaUCGCGCGc -3' miRNA: 3'- cauaGGCCuuUG-GCCGCA-----------AGCGCGCc -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 22661 | 0.66 | 0.710813 |
Target: 5'- cUAUCCGcAAuaucCCGuGCgGUUCGUGCGGc -3' miRNA: 3'- cAUAGGCcUUu---GGC-CG-CAAGCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 9353 | 0.66 | 0.709742 |
Target: 5'- cGUAUCgGuGAAggcgagcGCCGGCGgcugcgggaauUUCaGCGCGGc -3' miRNA: 3'- -CAUAGgC-CUU-------UGGCCGC-----------AAG-CGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 43660 | 0.66 | 0.700066 |
Target: 5'- cUAUCaGcGAAugGCCGGCGgacaacaGCGCGGa -3' miRNA: 3'- cAUAGgC-CUU--UGGCCGCaag----CGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 43083 | 0.66 | 0.700066 |
Target: 5'- ---gCCGG--GCCGGCuGUcgaGCGCGGc -3' miRNA: 3'- cauaGGCCuuUGGCCG-CAag-CGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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