miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24128 5' -55 NC_005263.2 + 1834 0.66 0.709742
Target:  5'- -cGUCCGaGuaccaaagugugcAGGCCGGCGa-CGUGCGGu -3'
miRNA:   3'- caUAGGC-C-------------UUUGGCCGCaaGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 3334 0.7 0.494861
Target:  5'- -cGUCUGcGcgccGCCGGCGccgCGCGCGGu -3'
miRNA:   3'- caUAGGC-Cuu--UGGCCGCaa-GCGCGCC- -5'
24128 5' -55 NC_005263.2 + 8825 0.66 0.732065
Target:  5'- ---gCCGGccGCuCGGCGUgcgaucaagcaUCGCGCGc -3'
miRNA:   3'- cauaGGCCuuUG-GCCGCA-----------AGCGCGCc -5'
24128 5' -55 NC_005263.2 + 9353 0.66 0.709742
Target:  5'- cGUAUCgGuGAAggcgagcGCCGGCGgcugcgggaauUUCaGCGCGGc -3'
miRNA:   3'- -CAUAGgC-CUU-------UGGCCGC-----------AAG-CGCGCC- -5'
24128 5' -55 NC_005263.2 + 10177 0.69 0.558192
Target:  5'- ---aCCGGcuGCCGGCGg-CGCGCc- -3'
miRNA:   3'- cauaGGCCuuUGGCCGCaaGCGCGcc -5'
24128 5' -55 NC_005263.2 + 10393 0.67 0.643368
Target:  5'- ---gCCGGGccGGCCGGCGagcggguccggCGCGCGu -3'
miRNA:   3'- cauaGGCCU--UUGGCCGCaa---------GCGCGCc -5'
24128 5' -55 NC_005263.2 + 11931 0.68 0.579847
Target:  5'- aUAUCCGGcAGCCGGCcgguaucgacGUUCGCcucgaGCGc -3'
miRNA:   3'- cAUAGGCCuUUGGCCG----------CAAGCG-----CGCc -5'
24128 5' -55 NC_005263.2 + 12503 0.72 0.362145
Target:  5'- -cAUCCuGcgcGCCGGC-UUCGCGCGGg -3'
miRNA:   3'- caUAGGcCuu-UGGCCGcAAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 12859 0.74 0.313335
Target:  5'- cGUAUUCGauGggGCCGGCGU--GCGUGGu -3'
miRNA:   3'- -CAUAGGC--CuuUGGCCGCAagCGCGCC- -5'
24128 5' -55 NC_005263.2 + 14172 0.68 0.61263
Target:  5'- ---gCCGGcgGCCGGUGU--GCGCGa -3'
miRNA:   3'- cauaGGCCuuUGGCCGCAagCGCGCc -5'
24128 5' -55 NC_005263.2 + 14263 0.67 0.689253
Target:  5'- --uUgCGGcgGCCGGCGcaaCGCGCGc -3'
miRNA:   3'- cauAgGCCuuUGGCCGCaa-GCGCGCc -5'
24128 5' -55 NC_005263.2 + 14930 0.7 0.493832
Target:  5'- -aGUCCGGGuuguagccgaucuGAuCCGGauCGUUCaGCGCGGg -3'
miRNA:   3'- caUAGGCCU-------------UU-GGCC--GCAAG-CGCGCC- -5'
24128 5' -55 NC_005263.2 + 15827 0.68 0.61263
Target:  5'- ---aCCGGcuccGACCuGGCGcgcUUCGCGUGGc -3'
miRNA:   3'- cauaGGCCu---UUGG-CCGC---AAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 16777 0.67 0.678385
Target:  5'- ----aCGGccGCCGGCGUaUCGC-CGGa -3'
miRNA:   3'- cauagGCCuuUGGCCGCA-AGCGcGCC- -5'
24128 5' -55 NC_005263.2 + 17748 0.68 0.579847
Target:  5'- ---cUCGGc-GCCGGCGgcaGCGCGGc -3'
miRNA:   3'- cauaGGCCuuUGGCCGCaagCGCGCC- -5'
24128 5' -55 NC_005263.2 + 18748 0.69 0.547449
Target:  5'- ---gCCGGGuuACCGGCGccugcUCGCGCa- -3'
miRNA:   3'- cauaGGCCUu-UGGCCGCa----AGCGCGcc -5'
24128 5' -55 NC_005263.2 + 19868 0.67 0.645564
Target:  5'- -gGUCaCGGcGAGCgCGGCGa--GCGCGGc -3'
miRNA:   3'- caUAG-GCC-UUUG-GCCGCaagCGCGCC- -5'
24128 5' -55 NC_005263.2 + 20099 0.66 0.732065
Target:  5'- -cGUCUGGucGACCaGCGUcgcCGCGCaGGg -3'
miRNA:   3'- caUAGGCCu-UUGGcCGCAa--GCGCG-CC- -5'
24128 5' -55 NC_005263.2 + 20409 0.68 0.623604
Target:  5'- cUAUgCGGccGCCGGCGccggCGCGCa- -3'
miRNA:   3'- cAUAgGCCuuUGGCCGCaa--GCGCGcc -5'
24128 5' -55 NC_005263.2 + 21853 0.65 0.752918
Target:  5'- -gAUCaGGucGCC-GCGUUCGCGaCGGc -3'
miRNA:   3'- caUAGgCCuuUGGcCGCAAGCGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.