miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24128 5' -55 NC_005263.2 + 22185 0.69 0.536772
Target:  5'- ---gCCGGGcgAACCGGUGcUgGCGUGGc -3'
miRNA:   3'- cauaGGCCU--UUGGCCGCaAgCGCGCC- -5'
24128 5' -55 NC_005263.2 + 22490 0.68 0.590742
Target:  5'- uGUcgCCGGcggcGGCCGGCGgcggUUCG-GCGGc -3'
miRNA:   3'- -CAuaGGCCu---UUGGCCGC----AAGCgCGCC- -5'
24128 5' -55 NC_005263.2 + 22661 0.66 0.710813
Target:  5'- cUAUCCGcAAuaucCCGuGCgGUUCGUGCGGc -3'
miRNA:   3'- cAUAGGCcUUu---GGC-CG-CAAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 22887 0.75 0.249746
Target:  5'- ---gCCGGGAucgGCaCGGCGUUCGUGcCGGa -3'
miRNA:   3'- cauaGGCCUU---UG-GCCGCAAGCGC-GCC- -5'
24128 5' -55 NC_005263.2 + 24469 0.67 0.65653
Target:  5'- -cGUUCGGGuucguGCCGcCGUucaUCGUGCGGa -3'
miRNA:   3'- caUAGGCCUu----UGGCcGCA---AGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 24531 0.68 0.601673
Target:  5'- cGUAUCgGGcaa-CGGCGgcgGCGCGGg -3'
miRNA:   3'- -CAUAGgCCuuugGCCGCaagCGCGCC- -5'
24128 5' -55 NC_005263.2 + 24818 0.66 0.732065
Target:  5'- cGUAUUCGGccuauacGGCCGGCGgcaaCG-GCGGu -3'
miRNA:   3'- -CAUAGGCCu------UUGGCCGCaa--GCgCGCC- -5'
24128 5' -55 NC_005263.2 + 27769 0.67 0.645564
Target:  5'- ---cCCGaGGugCGGCGgcaggccaugcUUCGCGCGGu -3'
miRNA:   3'- cauaGGCcUUugGCCGC-----------AAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 28297 0.69 0.526168
Target:  5'- -gGUUCGGAAACUGcGCGaUCGCgGCGc -3'
miRNA:   3'- caUAGGCCUUUGGC-CGCaAGCG-CGCc -5'
24128 5' -55 NC_005263.2 + 28413 0.69 0.558192
Target:  5'- ---cCCGGAGgcGCCGGCa--CGCGCGu -3'
miRNA:   3'- cauaGGCCUU--UGGCCGcaaGCGCGCc -5'
24128 5' -55 NC_005263.2 + 31330 0.69 0.536772
Target:  5'- -cGUCCGGcgauacGCCGGCGgccgUCagGCGCGa -3'
miRNA:   3'- caUAGGCCuu----UGGCCGCa---AG--CGCGCc -5'
24128 5' -55 NC_005263.2 + 32905 0.69 0.558192
Target:  5'- ---cCCGGAAgcgcuuGCCGaCG-UCGCGCGGc -3'
miRNA:   3'- cauaGGCCUU------UGGCcGCaAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 33400 0.66 0.710813
Target:  5'- cUAUCCGGA--UCGGCGUcgaUCGCcuugaGCGc -3'
miRNA:   3'- cAUAGGCCUuuGGCCGCA---AGCG-----CGCc -5'
24128 5' -55 NC_005263.2 + 34361 0.65 0.752918
Target:  5'- -cAUCCGGccuggccGCCGGCGguaaCGcCGCGa -3'
miRNA:   3'- caUAGGCCuu-----UGGCCGCaa--GC-GCGCc -5'
24128 5' -55 NC_005263.2 + 37711 0.68 0.61263
Target:  5'- ---gCCGGAcccgcucgccGGCCGGCccggCGCGUGGc -3'
miRNA:   3'- cauaGGCCU----------UUGGCCGcaa-GCGCGCC- -5'
24128 5' -55 NC_005263.2 + 39069 0.68 0.601673
Target:  5'- ----gCGGAcgucguAGCCGGCucgccgUCGCGCGGc -3'
miRNA:   3'- cauagGCCU------UUGGCCGca----AGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 40054 0.66 0.732065
Target:  5'- -gAUCaCGGAAcucGCgCGGCGccacgGCGCGGa -3'
miRNA:   3'- caUAG-GCCUU---UG-GCCGCaag--CGCGCC- -5'
24128 5' -55 NC_005263.2 + 40895 0.7 0.505207
Target:  5'- --uUCUGGucGCCGGCGaUgGuCGCGGa -3'
miRNA:   3'- cauAGGCCuuUGGCCGCaAgC-GCGCC- -5'
24128 5' -55 NC_005263.2 + 41142 1.1 0.000988
Target:  5'- aGUAUCCGGAAACCGGCGUUCGCGCGGc -3'
miRNA:   3'- -CAUAGGCCUUUGGCCGCAAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 41766 0.68 0.623604
Target:  5'- -gAUCaacgaGGAGAUCGGCGcgggcgacUCGCGCGc -3'
miRNA:   3'- caUAGg----CCUUUGGCCGCa-------AGCGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.