Results 21 - 40 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24128 | 5' | -55 | NC_005263.2 | + | 22490 | 0.68 | 0.590742 |
Target: 5'- uGUcgCCGGcggcGGCCGGCGgcggUUCG-GCGGc -3' miRNA: 3'- -CAuaGGCCu---UUGGCCGC----AAGCgCGCC- -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 11931 | 0.68 | 0.579847 |
Target: 5'- aUAUCCGGcAGCCGGCcgguaucgacGUUCGCcucgaGCGc -3' miRNA: 3'- cAUAGGCCuUUGGCCG----------CAAGCG-----CGCc -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 41766 | 0.68 | 0.623604 |
Target: 5'- -gAUCaacgaGGAGAUCGGCGcgggcgacUCGCGCGc -3' miRNA: 3'- caUAGg----CCUUUGGCCGCa-------AGCGCGCc -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 14172 | 0.68 | 0.61263 |
Target: 5'- ---gCCGGcgGCCGGUGU--GCGCGa -3' miRNA: 3'- cauaGGCCuuUGGCCGCAagCGCGCc -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 17748 | 0.68 | 0.579847 |
Target: 5'- ---cUCGGc-GCCGGCGgcaGCGCGGc -3' miRNA: 3'- cauaGGCCuuUGGCCGCaagCGCGCC- -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 15827 | 0.68 | 0.61263 |
Target: 5'- ---aCCGGcuccGACCuGGCGcgcUUCGCGUGGc -3' miRNA: 3'- cauaGGCCu---UUGG-CCGC---AAGCGCGCC- -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 39069 | 0.68 | 0.601673 |
Target: 5'- ----gCGGAcgucguAGCCGGCucgccgUCGCGCGGc -3' miRNA: 3'- cauagGCCU------UUGGCCGca----AGCGCGCC- -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 24531 | 0.68 | 0.601673 |
Target: 5'- cGUAUCgGGcaa-CGGCGgcgGCGCGGg -3' miRNA: 3'- -CAUAGgCCuuugGCCGCaagCGCGCC- -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 28413 | 0.69 | 0.558192 |
Target: 5'- ---cCCGGAGgcGCCGGCa--CGCGCGu -3' miRNA: 3'- cauaGGCCUU--UGGCCGcaaGCGCGCc -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 10177 | 0.69 | 0.558192 |
Target: 5'- ---aCCGGcuGCCGGCGg-CGCGCc- -3' miRNA: 3'- cauaGGCCuuUGGCCGCaaGCGCGcc -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 32905 | 0.69 | 0.558192 |
Target: 5'- ---cCCGGAAgcgcuuGCCGaCG-UCGCGCGGc -3' miRNA: 3'- cauaGGCCUU------UGGCcGCaAGCGCGCC- -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 31330 | 0.69 | 0.536772 |
Target: 5'- -cGUCCGGcgauacGCCGGCGgccgUCagGCGCGa -3' miRNA: 3'- caUAGGCCuu----UGGCCGCa---AG--CGCGCc -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 18748 | 0.69 | 0.547449 |
Target: 5'- ---gCCGGGuuACCGGCGccugcUCGCGCa- -3' miRNA: 3'- cauaGGCCUu-UGGCCGCa----AGCGCGcc -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 28297 | 0.69 | 0.526168 |
Target: 5'- -gGUUCGGAAACUGcGCGaUCGCgGCGc -3' miRNA: 3'- caUAGGCCUUUGGC-CGCaAGCG-CGCc -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 22185 | 0.69 | 0.536772 |
Target: 5'- ---gCCGGGcgAACCGGUGcUgGCGUGGc -3' miRNA: 3'- cauaGGCCU--UUGGCCGCaAgCGCGCC- -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 40895 | 0.7 | 0.505207 |
Target: 5'- --uUCUGGucGCCGGCGaUgGuCGCGGa -3' miRNA: 3'- cauAGGCCuuUGGCCGCaAgC-GCGCC- -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 14930 | 0.7 | 0.493832 |
Target: 5'- -aGUCCGGGuuguagccgaucuGAuCCGGauCGUUCaGCGCGGg -3' miRNA: 3'- caUAGGCCU-------------UU-GGCC--GCAAG-CGCGCC- -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 3334 | 0.7 | 0.494861 |
Target: 5'- -cGUCUGcGcgccGCCGGCGccgCGCGCGGu -3' miRNA: 3'- caUAGGC-Cuu--UGGCCGCaa-GCGCGCC- -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 44381 | 0.7 | 0.494861 |
Target: 5'- -gAUCCGGc--CCGGCGUgCGCGaGGc -3' miRNA: 3'- caUAGGCCuuuGGCCGCAaGCGCgCC- -5' |
|||||||
24128 | 5' | -55 | NC_005263.2 | + | 46173 | 0.72 | 0.393868 |
Target: 5'- cGUcgCCGGu-GCCGGCGcgcucgugcagaCGCGCGGc -3' miRNA: 3'- -CAuaGGCCuuUGGCCGCaa----------GCGCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home