miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24128 5' -55 NC_005263.2 + 20409 0.68 0.623604
Target:  5'- cUAUgCGGccGCCGGCGccggCGCGCa- -3'
miRNA:   3'- cAUAgGCCuuUGGCCGCaa--GCGCGcc -5'
24128 5' -55 NC_005263.2 + 12503 0.72 0.362145
Target:  5'- -cAUCCuGcgcGCCGGC-UUCGCGCGGg -3'
miRNA:   3'- caUAGGcCuu-UGGCCGcAAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 17748 0.68 0.579847
Target:  5'- ---cUCGGc-GCCGGCGgcaGCGCGGc -3'
miRNA:   3'- cauaGGCCuuUGGCCGCaagCGCGCC- -5'
24128 5' -55 NC_005263.2 + 22661 0.66 0.710813
Target:  5'- cUAUCCGcAAuaucCCGuGCgGUUCGUGCGGc -3'
miRNA:   3'- cAUAGGCcUUu---GGC-CG-CAAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 41142 1.1 0.000988
Target:  5'- aGUAUCCGGAAACCGGCGUUCGCGCGGc -3'
miRNA:   3'- -CAUAGGCCUUUGGCCGCAAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 8825 0.66 0.732065
Target:  5'- ---gCCGGccGCuCGGCGUgcgaucaagcaUCGCGCGc -3'
miRNA:   3'- cauaGGCCuuUG-GCCGCA-----------AGCGCGCc -5'
24128 5' -55 NC_005263.2 + 9353 0.66 0.709742
Target:  5'- cGUAUCgGuGAAggcgagcGCCGGCGgcugcgggaauUUCaGCGCGGc -3'
miRNA:   3'- -CAUAGgC-CUU-------UGGCCGC-----------AAG-CGCGCC- -5'
24128 5' -55 NC_005263.2 + 43660 0.66 0.700066
Target:  5'- cUAUCaGcGAAugGCCGGCGgacaacaGCGCGGa -3'
miRNA:   3'- cAUAGgC-CUU--UGGCCGCaag----CGCGCC- -5'
24128 5' -55 NC_005263.2 + 43083 0.66 0.700066
Target:  5'- ---gCCGG--GCCGGCuGUcgaGCGCGGc -3'
miRNA:   3'- cauaGGCCuuUGGCCG-CAag-CGCGCC- -5'
24128 5' -55 NC_005263.2 + 14263 0.67 0.689253
Target:  5'- --uUgCGGcgGCCGGCGcaaCGCGCGc -3'
miRNA:   3'- cauAgGCCuuUGGCCGCaa-GCGCGCc -5'
24128 5' -55 NC_005263.2 + 16777 0.67 0.678385
Target:  5'- ----aCGGccGCCGGCGUaUCGC-CGGa -3'
miRNA:   3'- cauagGCCuuUGGCCGCA-AGCGcGCC- -5'
24128 5' -55 NC_005263.2 + 10393 0.67 0.643368
Target:  5'- ---gCCGGGccGGCCGGCGagcggguccggCGCGCGu -3'
miRNA:   3'- cauaGGCCU--UUGGCCGCaa---------GCGCGCc -5'
24128 5' -55 NC_005263.2 + 15827 0.68 0.61263
Target:  5'- ---aCCGGcuccGACCuGGCGcgcUUCGCGUGGc -3'
miRNA:   3'- cauaGGCCu---UUGG-CCGC---AAGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 39069 0.68 0.601673
Target:  5'- ----gCGGAcgucguAGCCGGCucgccgUCGCGCGGc -3'
miRNA:   3'- cauagGCCU------UUGGCCGca----AGCGCGCC- -5'
24128 5' -55 NC_005263.2 + 24531 0.68 0.601673
Target:  5'- cGUAUCgGGcaa-CGGCGgcgGCGCGGg -3'
miRNA:   3'- -CAUAGgCCuuugGCCGCaagCGCGCC- -5'
24128 5' -55 NC_005263.2 + 28413 0.69 0.558192
Target:  5'- ---cCCGGAGgcGCCGGCa--CGCGCGu -3'
miRNA:   3'- cauaGGCCUU--UGGCCGcaaGCGCGCc -5'
24128 5' -55 NC_005263.2 + 3334 0.7 0.494861
Target:  5'- -cGUCUGcGcgccGCCGGCGccgCGCGCGGu -3'
miRNA:   3'- caUAGGC-Cuu--UGGCCGCaa-GCGCGCC- -5'
24128 5' -55 NC_005263.2 + 44381 0.7 0.494861
Target:  5'- -gAUCCGGc--CCGGCGUgCGCGaGGc -3'
miRNA:   3'- caUAGGCCuuuGGCCGCAaGCGCgCC- -5'
24128 5' -55 NC_005263.2 + 46173 0.72 0.393868
Target:  5'- cGUcgCCGGu-GCCGGCGcgcucgugcagaCGCGCGGc -3'
miRNA:   3'- -CAuaGGCCuuUGGCCGCaa----------GCGCGCC- -5'
24128 5' -55 NC_005263.2 + 12859 0.74 0.313335
Target:  5'- cGUAUUCGauGggGCCGGCGU--GCGUGGu -3'
miRNA:   3'- -CAUAGGC--CuuUGGCCGCAagCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.