Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24128 | 5' | -55 | NC_005263.2 | + | 46173 | 0.72 | 0.393868 |
Target: 5'- cGUcgCCGGu-GCCGGCGcgcucgugcagaCGCGCGGc -3' miRNA: 3'- -CAuaGGCCuuUGGCCGCaa----------GCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 44381 | 0.7 | 0.494861 |
Target: 5'- -gAUCCGGc--CCGGCGUgCGCGaGGc -3' miRNA: 3'- caUAGGCCuuuGGCCGCAaGCGCgCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 43660 | 0.66 | 0.700066 |
Target: 5'- cUAUCaGcGAAugGCCGGCGgacaacaGCGCGGa -3' miRNA: 3'- cAUAGgC-CUU--UGGCCGCaag----CGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 43083 | 0.66 | 0.700066 |
Target: 5'- ---gCCGG--GCCGGCuGUcgaGCGCGGc -3' miRNA: 3'- cauaGGCCuuUGGCCG-CAag-CGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 41766 | 0.68 | 0.623604 |
Target: 5'- -gAUCaacgaGGAGAUCGGCGcgggcgacUCGCGCGc -3' miRNA: 3'- caUAGg----CCUUUGGCCGCa-------AGCGCGCc -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 41142 | 1.1 | 0.000988 |
Target: 5'- aGUAUCCGGAAACCGGCGUUCGCGCGGc -3' miRNA: 3'- -CAUAGGCCUUUGGCCGCAAGCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 40895 | 0.7 | 0.505207 |
Target: 5'- --uUCUGGucGCCGGCGaUgGuCGCGGa -3' miRNA: 3'- cauAGGCCuuUGGCCGCaAgC-GCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 40054 | 0.66 | 0.732065 |
Target: 5'- -gAUCaCGGAAcucGCgCGGCGccacgGCGCGGa -3' miRNA: 3'- caUAG-GCCUU---UG-GCCGCaag--CGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 39069 | 0.68 | 0.601673 |
Target: 5'- ----gCGGAcgucguAGCCGGCucgccgUCGCGCGGc -3' miRNA: 3'- cauagGCCU------UUGGCCGca----AGCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 37711 | 0.68 | 0.61263 |
Target: 5'- ---gCCGGAcccgcucgccGGCCGGCccggCGCGUGGc -3' miRNA: 3'- cauaGGCCU----------UUGGCCGcaa-GCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 34361 | 0.65 | 0.752918 |
Target: 5'- -cAUCCGGccuggccGCCGGCGguaaCGcCGCGa -3' miRNA: 3'- caUAGGCCuu-----UGGCCGCaa--GC-GCGCc -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 33400 | 0.66 | 0.710813 |
Target: 5'- cUAUCCGGA--UCGGCGUcgaUCGCcuugaGCGc -3' miRNA: 3'- cAUAGGCCUuuGGCCGCA---AGCG-----CGCc -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 32905 | 0.69 | 0.558192 |
Target: 5'- ---cCCGGAAgcgcuuGCCGaCG-UCGCGCGGc -3' miRNA: 3'- cauaGGCCUU------UGGCcGCaAGCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 31330 | 0.69 | 0.536772 |
Target: 5'- -cGUCCGGcgauacGCCGGCGgccgUCagGCGCGa -3' miRNA: 3'- caUAGGCCuu----UGGCCGCa---AG--CGCGCc -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 28413 | 0.69 | 0.558192 |
Target: 5'- ---cCCGGAGgcGCCGGCa--CGCGCGu -3' miRNA: 3'- cauaGGCCUU--UGGCCGcaaGCGCGCc -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 28297 | 0.69 | 0.526168 |
Target: 5'- -gGUUCGGAAACUGcGCGaUCGCgGCGc -3' miRNA: 3'- caUAGGCCUUUGGC-CGCaAGCG-CGCc -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 27769 | 0.67 | 0.645564 |
Target: 5'- ---cCCGaGGugCGGCGgcaggccaugcUUCGCGCGGu -3' miRNA: 3'- cauaGGCcUUugGCCGC-----------AAGCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 24818 | 0.66 | 0.732065 |
Target: 5'- cGUAUUCGGccuauacGGCCGGCGgcaaCG-GCGGu -3' miRNA: 3'- -CAUAGGCCu------UUGGCCGCaa--GCgCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 24531 | 0.68 | 0.601673 |
Target: 5'- cGUAUCgGGcaa-CGGCGgcgGCGCGGg -3' miRNA: 3'- -CAUAGgCCuuugGCCGCaagCGCGCC- -5' |
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24128 | 5' | -55 | NC_005263.2 | + | 24469 | 0.67 | 0.65653 |
Target: 5'- -cGUUCGGGuucguGCCGcCGUucaUCGUGCGGa -3' miRNA: 3'- caUAGGCCUu----UGGCcGCA---AGCGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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