Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 16949 | 0.66 | 0.726647 |
Target: 5'- aCGa--UCUGCGCCGA-CACgcaagGCGuACCg -3' miRNA: 3'- -GCgacAGACGUGGCUaGUGa----CGC-UGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 1925 | 0.66 | 0.726647 |
Target: 5'- gCGC-GUCUGCacgagcgcGCCGG-CACcgGCGACg -3' miRNA: 3'- -GCGaCAGACG--------UGGCUaGUGa-CGCUGg -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 32670 | 0.66 | 0.715904 |
Target: 5'- gCGCUGcCUcGCGCCGuacCugUaCGGCCg -3' miRNA: 3'- -GCGACaGA-CGUGGCua-GugAcGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 9698 | 0.66 | 0.715904 |
Target: 5'- gCGCuuUGcCUGC-UCGAcCGCUGCGGCg -3' miRNA: 3'- -GCG--ACaGACGuGGCUaGUGACGCUGg -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 30364 | 0.66 | 0.715904 |
Target: 5'- gCGCUGcCgccgGCGCCGAgugCGagccccaUGCGGCg -3' miRNA: 3'- -GCGACaGa---CGUGGCUa--GUg------ACGCUGg -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 26976 | 0.66 | 0.715904 |
Target: 5'- uGCaGUCcugcGCGCCGAgcagcaccCGCUGCG-CCg -3' miRNA: 3'- gCGaCAGa---CGUGGCUa-------GUGACGCuGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 16488 | 0.66 | 0.694179 |
Target: 5'- gGCg--CUGCGCCGcgCGgcCgucGCGACCg -3' miRNA: 3'- gCGacaGACGUGGCuaGU--Ga--CGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 41624 | 0.66 | 0.694179 |
Target: 5'- uCGUcGaCUGC-CUGGUugCACUGCGGCCc -3' miRNA: 3'- -GCGaCaGACGuGGCUA--GUGACGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 41266 | 0.66 | 0.683219 |
Target: 5'- uCGCcgGUCgUGuCGCCG-UCGCUGCGcuuCCc -3' miRNA: 3'- -GCGa-CAG-AC-GUGGCuAGUGACGCu--GG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 25252 | 0.66 | 0.683219 |
Target: 5'- gGCuUGUaCgcaGCACCGAUCAgCUGCauGCCg -3' miRNA: 3'- gCG-ACA-Ga--CGUGGCUAGU-GACGc-UGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 15379 | 0.66 | 0.678821 |
Target: 5'- aCGCUGUCggguagcgacccgGcCGCCGugcaugCGCUcGUGACCg -3' miRNA: 3'- -GCGACAGa------------C-GUGGCua----GUGA-CGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 37398 | 0.67 | 0.67221 |
Target: 5'- gGCUGcgCgacgUGCAUCGcGUCGC-GCGGCCg -3' miRNA: 3'- gCGACa-G----ACGUGGC-UAGUGaCGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 19750 | 0.67 | 0.67221 |
Target: 5'- gCGCUGgc-GCGCUGGcggCGCUcGUGGCCg -3' miRNA: 3'- -GCGACagaCGUGGCUa--GUGA-CGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 10677 | 0.67 | 0.661162 |
Target: 5'- gGCccagGUCgGCauaGCCGAcCACUucGCGACCg -3' miRNA: 3'- gCGa---CAGaCG---UGGCUaGUGA--CGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 44633 | 0.67 | 0.661162 |
Target: 5'- uCGCUG-CgGCAgCUGAUCgaGCUGCG-CCu -3' miRNA: 3'- -GCGACaGaCGU-GGCUAG--UGACGCuGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 19798 | 0.67 | 0.661162 |
Target: 5'- aGCUGauggGUGCCGGUCGCa-CGGCCg -3' miRNA: 3'- gCGACaga-CGUGGCUAGUGacGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 22827 | 0.67 | 0.661162 |
Target: 5'- aCGCUGUCgcgcGCGCgGAUCGgcaUGCaGCUg -3' miRNA: 3'- -GCGACAGa---CGUGgCUAGUg--ACGcUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 32395 | 0.67 | 0.650086 |
Target: 5'- gCGCUgGUCgaaccGC-CCGuaGUCGCUGCGAgCu -3' miRNA: 3'- -GCGA-CAGa----CGuGGC--UAGUGACGCUgG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 2679 | 0.67 | 0.650086 |
Target: 5'- gCGUUGUg-GUAgCUGAUCGC-GCGGCCg -3' miRNA: 3'- -GCGACAgaCGU-GGCUAGUGaCGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 2799 | 0.67 | 0.638994 |
Target: 5'- gGCUGgUCgagugccaugaGCACCGAguauUCGCaaaGCGACCa -3' miRNA: 3'- gCGAC-AGa----------CGUGGCU----AGUGa--CGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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