miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24136 5' -51.4 NC_005263.2 + 24838 0.66 0.850345
Target:  5'- gGCGGCaacgGCGGUGCCggugcGCCAGcCGg -3'
miRNA:   3'- -CGUCGg---CGCUAUGGaau--UGGUCuGUu -5'
24136 5' -51.4 NC_005263.2 + 6479 0.66 0.841268
Target:  5'- -gGGCCGCaGUGCa---ACCAGGCAGu -3'
miRNA:   3'- cgUCGGCGcUAUGgaauUGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 23989 0.66 0.841268
Target:  5'- --uGCCGUGGUGCCguacugaUAGCCcGGCAc -3'
miRNA:   3'- cguCGGCGCUAUGGa------AUUGGuCUGUu -5'
24136 5' -51.4 NC_005263.2 + 11302 0.66 0.831948
Target:  5'- aGCAGCgGCaauuuaugGCCUc-GCCAGGCAAc -3'
miRNA:   3'- -CGUCGgCGcua-----UGGAauUGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 21255 0.67 0.812621
Target:  5'- aGUAGCCGCGcaGUGCUgcucuugggGGCuCGGGCAGg -3'
miRNA:   3'- -CGUCGGCGC--UAUGGaa-------UUG-GUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 25504 0.67 0.812621
Target:  5'- aCGGUCGUcGUGCCcUGACCGGAgAAg -3'
miRNA:   3'- cGUCGGCGcUAUGGaAUUGGUCUgUU- -5'
24136 5' -51.4 NC_005263.2 + 40272 0.67 0.802636
Target:  5'- cGCGGCCGgccaacCGAUcgacgaauucgaACCUuucUGACUAGGCAAa -3'
miRNA:   3'- -CGUCGGC------GCUA------------UGGA---AUUGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 41920 0.67 0.799602
Target:  5'- aGCAGCCcgaauucgaccugcGCGugauucuggGCCUgauggAGCCGGACAGc -3'
miRNA:   3'- -CGUCGG--------------CGCua-------UGGAa----UUGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 22518 0.67 0.792454
Target:  5'- gGCGGCUGCG--GCCUgcucgauGCCgAGACGGg -3'
miRNA:   3'- -CGUCGGCGCuaUGGAau-----UGG-UCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 44790 0.67 0.771547
Target:  5'- cGCAGacguugaacaCCGCGcgGCCgcgcCCAGGCAAg -3'
miRNA:   3'- -CGUC----------GGCGCuaUGGaauuGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 17399 0.67 0.771547
Target:  5'- cGCGGCCGCGc-GCCU--GgCGGGCGGu -3'
miRNA:   3'- -CGUCGGCGCuaUGGAauUgGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 9434 0.68 0.716725
Target:  5'- uUAGCCGCGc-ACCUUGAUCuuGGCGAg -3'
miRNA:   3'- cGUCGGCGCuaUGGAAUUGGu-CUGUU- -5'
24136 5' -51.4 NC_005263.2 + 9963 0.68 0.716725
Target:  5'- uGCAGCuUGUGcgACCaguGCCGGGCAGg -3'
miRNA:   3'- -CGUCG-GCGCuaUGGaauUGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 5764 0.69 0.702024
Target:  5'- aGCAGCaCGCGAUacgcuucggucggcACCUUGcgGCCGGuCGc -3'
miRNA:   3'- -CGUCG-GCGCUA--------------UGGAAU--UGGUCuGUu -5'
24136 5' -51.4 NC_005263.2 + 37661 0.69 0.694054
Target:  5'- -gGGCaCGCGAUcgACCUgauugAAUCGGACGAg -3'
miRNA:   3'- cgUCG-GCGCUA--UGGAa----UUGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 20442 0.69 0.694054
Target:  5'- gGCGGCCGUGcuUGCCgccGCCgAGACGu -3'
miRNA:   3'- -CGUCGGCGCu-AUGGaauUGG-UCUGUu -5'
24136 5' -51.4 NC_005263.2 + 30357 0.69 0.694054
Target:  5'- cGCGGCCGCGcUGCC---GCCGG-CGc -3'
miRNA:   3'- -CGUCGGCGCuAUGGaauUGGUCuGUu -5'
24136 5' -51.4 NC_005263.2 + 31712 0.69 0.659582
Target:  5'- cGCAcCCGCGAUGCCg--GCCAGcuuCAu -3'
miRNA:   3'- -CGUcGGCGCUAUGGaauUGGUCu--GUu -5'
24136 5' -51.4 NC_005263.2 + 2884 0.7 0.648018
Target:  5'- cGCAGCgGCGAggcugAUgUUGGCCgAGACGu -3'
miRNA:   3'- -CGUCGgCGCUa----UGgAAUUGG-UCUGUu -5'
24136 5' -51.4 NC_005263.2 + 27522 0.7 0.644545
Target:  5'- cCGGUCGCGGUGCCcgUcggcacggccggcaGGCCGGGCAc -3'
miRNA:   3'- cGUCGGCGCUAUGGa-A--------------UUGGUCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.