miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24137 3' -57.8 NC_005263.2 + 12864 0.66 0.562777
Target:  5'- uCGAugGGGCcgGCGuGCGUGgUGUGGCg -3'
miRNA:   3'- cGCUugCUCG--CGUuCGCGCgGCGUCG- -5'
24137 3' -57.8 NC_005263.2 + 35509 0.66 0.562777
Target:  5'- cGCGGucaGuGGCcccGUAAGUGUGCCGcCGGCg -3'
miRNA:   3'- -CGCUug-C-UCG---CGUUCGCGCGGC-GUCG- -5'
24137 3' -57.8 NC_005263.2 + 37329 0.66 0.562777
Target:  5'- uCGAuguCGAGgGCGAuGCGUuccagucgGUCGCGGCc -3'
miRNA:   3'- cGCUu--GCUCgCGUU-CGCG--------CGGCGUCG- -5'
24137 3' -57.8 NC_005263.2 + 14006 0.66 0.562777
Target:  5'- uCGAACuGAcGCGCGAG-GCGCagCGaCGGCg -3'
miRNA:   3'- cGCUUG-CU-CGCGUUCgCGCG--GC-GUCG- -5'
24137 3' -57.8 NC_005263.2 + 33122 0.66 0.562777
Target:  5'- aGCaGAACGucacGCGCAGauCGCuGCCGcCAGCc -3'
miRNA:   3'- -CG-CUUGCu---CGCGUUc-GCG-CGGC-GUCG- -5'
24137 3' -57.8 NC_005263.2 + 35365 0.66 0.562777
Target:  5'- cGUGAGCGcagacgucgcAGUGCcAGUuaGCGCCGCcuuuGCu -3'
miRNA:   3'- -CGCUUGC----------UCGCGuUCG--CGCGGCGu---CG- -5'
24137 3' -57.8 NC_005263.2 + 35729 0.66 0.562777
Target:  5'- -aGAcgGCGAGaCGCcGGaagaaGCGgCGCGGCg -3'
miRNA:   3'- cgCU--UGCUC-GCGuUCg----CGCgGCGUCG- -5'
24137 3' -57.8 NC_005263.2 + 13756 0.66 0.562777
Target:  5'- cCGGuuuacACG-GCGaCAGGCGCGUCGCuuaaugGGCc -3'
miRNA:   3'- cGCU-----UGCuCGC-GUUCGCGCGGCG------UCG- -5'
24137 3' -57.8 NC_005263.2 + 42119 0.66 0.562777
Target:  5'- uGCGcuucGCGAGUGaCAAGCaGCGCaGCAaacuGCa -3'
miRNA:   3'- -CGCu---UGCUCGC-GUUCG-CGCGgCGU----CG- -5'
24137 3' -57.8 NC_005263.2 + 35044 0.66 0.562777
Target:  5'- uGCaAGCGcaAGCGCAAGagcagaugaGCGCCGUcucGCa -3'
miRNA:   3'- -CGcUUGC--UCGCGUUCg--------CGCGGCGu--CG- -5'
24137 3' -57.8 NC_005263.2 + 25950 0.66 0.562777
Target:  5'- gGCGcaauGCGAGCGU---CGCGCCGUcgAGg -3'
miRNA:   3'- -CGCu---UGCUCGCGuucGCGCGGCG--UCg -5'
24137 3' -57.8 NC_005263.2 + 16677 0.66 0.562777
Target:  5'- cGUGAACauucaGCAGGaCGUGCCGCAcauGCu -3'
miRNA:   3'- -CGCUUGcucg-CGUUC-GCGCGGCGU---CG- -5'
24137 3' -57.8 NC_005263.2 + 4647 0.66 0.558487
Target:  5'- cGCGAucaugGCGAcgggcaggccggcGCGCGGGUcuuucgucaggaucGUGCCGuCGGCg -3'
miRNA:   3'- -CGCU-----UGCU-------------CGCGUUCG--------------CGCGGC-GUCG- -5'
24137 3' -57.8 NC_005263.2 + 29281 0.66 0.552069
Target:  5'- cGCGGcaAUGAGCuGCAcGGCG-GCCGgguCGGCa -3'
miRNA:   3'- -CGCU--UGCUCG-CGU-UCGCgCGGC---GUCG- -5'
24137 3' -57.8 NC_005263.2 + 182 0.66 0.552069
Target:  5'- -gGGGCGAGCccGCugcccGUGCGCC-CGGCc -3'
miRNA:   3'- cgCUUGCUCG--CGuu---CGCGCGGcGUCG- -5'
24137 3' -57.8 NC_005263.2 + 2426 0.66 0.552069
Target:  5'- aGCGGcaGCGugccuugguacGGCGCGGcaaacacuuGCGCGCCGaacgaAGCc -3'
miRNA:   3'- -CGCU--UGC-----------UCGCGUU---------CGCGCGGCg----UCG- -5'
24137 3' -57.8 NC_005263.2 + 6281 0.66 0.552069
Target:  5'- uCGAaagGCGucuGCGCAaacagcaacaccGGCGCGCC-CGGUu -3'
miRNA:   3'- cGCU---UGCu--CGCGU------------UCGCGCGGcGUCG- -5'
24137 3' -57.8 NC_005263.2 + 27527 0.66 0.552069
Target:  5'- cGCGGugcccgucggcACG-GCcgGCAGGCcgggcacgaGCGUCGCGGCg -3'
miRNA:   3'- -CGCU-----------UGCuCG--CGUUCG---------CGCGGCGUCG- -5'
24137 3' -57.8 NC_005263.2 + 10897 0.66 0.552069
Target:  5'- cGUGAGCG-GCGUAucgccGCGCugggggauGCCGCAcGUg -3'
miRNA:   3'- -CGCUUGCuCGCGUu----CGCG--------CGGCGU-CG- -5'
24137 3' -57.8 NC_005263.2 + 21421 0.66 0.552069
Target:  5'- gGCGcauuACGuGCGCAucaaugGGCG-GCCGUcGCg -3'
miRNA:   3'- -CGCu---UGCuCGCGU------UCGCgCGGCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.