miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24147 5' -55.7 NC_005263.2 + 36156 1.09 0.000913
Target:  5'- gCGCGCGCUCGAGGCGAACGUCGAUACc -3'
miRNA:   3'- -GCGCGCGAGCUCCGCUUGCAGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 9578 0.75 0.211218
Target:  5'- gGCGCGCUCGcugcccuuGGCGAccugcgacACGUCGAcGCc -3'
miRNA:   3'- gCGCGCGAGCu-------CCGCU--------UGCAGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 6621 0.75 0.228583
Target:  5'- gGCGCGCUCGGcGCGGucgagcagucgcGCGUCGGUcGCu -3'
miRNA:   3'- gCGCGCGAGCUcCGCU------------UGCAGCUA-UG- -5'
24147 5' -55.7 NC_005263.2 + 19415 0.75 0.228583
Target:  5'- aCGCGCGCgUUGAGGUGuucgGCGugccgcUCGAUACg -3'
miRNA:   3'- -GCGCGCG-AGCUCCGCu---UGC------AGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 36322 0.74 0.247141
Target:  5'- gGCGCGUUCGAGGauuuguACGUCGAc-- -3'
miRNA:   3'- gCGCGCGAGCUCCgcu---UGCAGCUaug -5'
24147 5' -55.7 NC_005263.2 + 41161 0.74 0.253598
Target:  5'- uCGCGCGg-CGuGGGCGGccguCGUCGAUACg -3'
miRNA:   3'- -GCGCGCgaGC-UCCGCUu---GCAGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 9438 0.74 0.260194
Target:  5'- cCGCGCacCUUGAucuuGGCGAgguugGCGUCGAUGCg -3'
miRNA:   3'- -GCGCGc-GAGCU----CCGCU-----UGCAGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 21579 0.74 0.260194
Target:  5'- cCGCGUGCUCGccGCcGGCGUCGAcGCc -3'
miRNA:   3'- -GCGCGCGAGCucCGcUUGCAGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 45609 0.73 0.273803
Target:  5'- uCGCGCccgauCUCGAGGC-AGCGUCGAUcgucACg -3'
miRNA:   3'- -GCGCGc----GAGCUCCGcUUGCAGCUA----UG- -5'
24147 5' -55.7 NC_005263.2 + 16826 0.73 0.280819
Target:  5'- uCGaCGCGCUCGAcGCGuucaaccaGUCGAUGCg -3'
miRNA:   3'- -GC-GCGCGAGCUcCGCuug-----CAGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 20657 0.73 0.295278
Target:  5'- cCGCGcCGCUCGucGCGGcCGUCGAa-- -3'
miRNA:   3'- -GCGC-GCGAGCucCGCUuGCAGCUaug -5'
24147 5' -55.7 NC_005263.2 + 3453 0.73 0.302723
Target:  5'- gCGCGCGCgacgcaUCGAGGCGcAGC-UCGAUcaGCu -3'
miRNA:   3'- -GCGCGCG------AGCUCCGC-UUGcAGCUA--UG- -5'
24147 5' -55.7 NC_005263.2 + 44403 0.73 0.31031
Target:  5'- aCGCGCGCggcauuGGCGucGACGUCGAaGCg -3'
miRNA:   3'- -GCGCGCGagcu--CCGC--UUGCAGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 29163 0.72 0.350406
Target:  5'- aCGCcCGCaCGuGGCGGGCGUCGGUuCa -3'
miRNA:   3'- -GCGcGCGaGCuCCGCUUGCAGCUAuG- -5'
24147 5' -55.7 NC_005263.2 + 29173 0.72 0.350406
Target:  5'- gGCGCGCUCGAGcgcucgugccgcGCGGucACGcUCGAcGCa -3'
miRNA:   3'- gCGCGCGAGCUC------------CGCU--UGC-AGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 32085 0.71 0.376175
Target:  5'- aCGUGCGUcacgUGcGGCG-GCGUCGGUGCg -3'
miRNA:   3'- -GCGCGCGa---GCuCCGCuUGCAGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 12134 0.71 0.385044
Target:  5'- aCGCGCGCUCcAGGCG---GUCGAg-- -3'
miRNA:   3'- -GCGCGCGAGcUCCGCuugCAGCUaug -5'
24147 5' -55.7 NC_005263.2 + 45011 0.71 0.39405
Target:  5'- gGCGCGCUgucgaaCGAGGCGAAgauCGcCGAcGCc -3'
miRNA:   3'- gCGCGCGA------GCUCCGCUU---GCaGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 21194 0.71 0.39405
Target:  5'- aCGCGCGCggCGcGGGCGA--GUgGGUGCg -3'
miRNA:   3'- -GCGCGCGa-GC-UCCGCUugCAgCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 5202 0.71 0.403192
Target:  5'- uCGCGCaCUCGcguuccAGGCGAGCG-CGcgGCa -3'
miRNA:   3'- -GCGCGcGAGC------UCCGCUUGCaGCuaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.