miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24147 5' -55.7 NC_005263.2 + 1222 0.69 0.501426
Target:  5'- -aUGCGCaUCGGGGaCGAGCG-CGAUGu -3'
miRNA:   3'- gcGCGCG-AGCUCC-GCUUGCaGCUAUg -5'
24147 5' -55.7 NC_005263.2 + 1276 0.67 0.597825
Target:  5'- gGCGCGC-CGccuGGCGcGCGUUGcguUACg -3'
miRNA:   3'- gCGCGCGaGCu--CCGCuUGCAGCu--AUG- -5'
24147 5' -55.7 NC_005263.2 + 1938 0.7 0.412467
Target:  5'- aGCGCGC-CGGcaccGGCGAcgccggcaaccGCGUCGAUcuGCu -3'
miRNA:   3'- gCGCGCGaGCU----CCGCU-----------UGCAGCUA--UG- -5'
24147 5' -55.7 NC_005263.2 + 2653 0.67 0.619774
Target:  5'- uCGCGCcggGCUCGAGGUGcaGGCGUgcguugUGGUAg -3'
miRNA:   3'- -GCGCG---CGAGCUCCGC--UUGCA------GCUAUg -5'
24147 5' -55.7 NC_005263.2 + 3453 0.73 0.302723
Target:  5'- gCGCGCGCgacgcaUCGAGGCGcAGC-UCGAUcaGCu -3'
miRNA:   3'- -GCGCGCG------AGCUCCGC-UUGcAGCUA--UG- -5'
24147 5' -55.7 NC_005263.2 + 3798 0.67 0.608789
Target:  5'- uGCGauCUgCGAGGCGAGCGcCGGa-- -3'
miRNA:   3'- gCGCgcGA-GCUCCGCUUGCaGCUaug -5'
24147 5' -55.7 NC_005263.2 + 5022 0.67 0.616477
Target:  5'- cCGcCGCGCUCGAcagccggcccGGCGGccgacuauuggccgACGUCGGc-- -3'
miRNA:   3'- -GC-GCGCGAGCU----------CCGCU--------------UGCAGCUaug -5'
24147 5' -55.7 NC_005263.2 + 5202 0.71 0.403192
Target:  5'- uCGCGCaCUCGcguuccAGGCGAGCG-CGcgGCa -3'
miRNA:   3'- -GCGCGcGAGC------UCCGCUUGCaGCuaUG- -5'
24147 5' -55.7 NC_005263.2 + 6575 0.67 0.58689
Target:  5'- cCGCGCGUUUGcgcAGGCGcaaguaGUCGAcGCg -3'
miRNA:   3'- -GCGCGCGAGC---UCCGCuug---CAGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 6621 0.75 0.228583
Target:  5'- gGCGCGCUCGGcGCGGucgagcagucgcGCGUCGGUcGCu -3'
miRNA:   3'- gCGCGCGAGCUcCGCU------------UGCAGCUA-UG- -5'
24147 5' -55.7 NC_005263.2 + 6763 0.7 0.431406
Target:  5'- uCGCGCGC-CG-GGCGAGCucggccucGUCGAa-- -3'
miRNA:   3'- -GCGCGCGaGCuCCGCUUG--------CAGCUaug -5'
24147 5' -55.7 NC_005263.2 + 8267 0.68 0.554346
Target:  5'- uGCGCGUUCGgacggccacAGcGCGAgcgGCGUCGGUc- -3'
miRNA:   3'- gCGCGCGAGC---------UC-CGCU---UGCAGCUAug -5'
24147 5' -55.7 NC_005263.2 + 9211 0.66 0.663721
Target:  5'- gGCgGCGCUCGuacGGC--GCG-CGGUACg -3'
miRNA:   3'- gCG-CGCGAGCu--CCGcuUGCaGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 9438 0.74 0.260194
Target:  5'- cCGCGCacCUUGAucuuGGCGAgguugGCGUCGAUGCg -3'
miRNA:   3'- -GCGCGc-GAGCU----CCGCU-----UGCAGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 9578 0.75 0.211218
Target:  5'- gGCGCGCUCGcugcccuuGGCGAccugcgacACGUCGAcGCc -3'
miRNA:   3'- gCGCGCGAGCu-------CCGCU--------UGCAGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 10673 0.67 0.59892
Target:  5'- cCGCGCGCgccgacguaugacgaCGAGGaCGGccgcGCGacgCGAUGCa -3'
miRNA:   3'- -GCGCGCGa--------------GCUCC-GCU----UGCa--GCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 10938 0.68 0.532944
Target:  5'- uCGCGuCGUgCGGGGUGAGCGcuUCGAg-- -3'
miRNA:   3'- -GCGC-GCGaGCUCCGCUUGC--AGCUaug -5'
24147 5' -55.7 NC_005263.2 + 12025 0.67 0.630768
Target:  5'- gGCGCGCUCaa-GCuuGCGcCGGUACa -3'
miRNA:   3'- gCGCGCGAGcucCGcuUGCaGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 12134 0.71 0.385044
Target:  5'- aCGCGCGCUCcAGGCG---GUCGAg-- -3'
miRNA:   3'- -GCGCGCGAGcUCCGCuugCAGCUaug -5'
24147 5' -55.7 NC_005263.2 + 12579 0.68 0.565142
Target:  5'- cCGCGCGC-CGccGGGCGca-GUCGGcGCg -3'
miRNA:   3'- -GCGCGCGaGC--UCCGCuugCAGCUaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.