miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24147 5' -55.7 NC_005263.2 + 9578 0.75 0.211218
Target:  5'- gGCGCGCUCGcugcccuuGGCGAccugcgacACGUCGAcGCc -3'
miRNA:   3'- gCGCGCGAGCu-------CCGCU--------UGCAGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 47358 0.69 0.501426
Target:  5'- gCGCGuCGC-CGAaaugGGCGGcGCGuUCGAUGCg -3'
miRNA:   3'- -GCGC-GCGaGCU----CCGCU-UGC-AGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 20188 0.68 0.522354
Target:  5'- aGCGCGC-CG-GGCGAcgcgccgcCGUCGAgUGCu -3'
miRNA:   3'- gCGCGCGaGCuCCGCUu-------GCAGCU-AUG- -5'
24147 5' -55.7 NC_005263.2 + 44671 0.66 0.688819
Target:  5'- gCGCGCGC-CGAagaagucGGCGGccauccugcgcgcacACGUCGGcgGCc -3'
miRNA:   3'- -GCGCGCGaGCU-------CCGCU---------------UGCAGCUa-UG- -5'
24147 5' -55.7 NC_005263.2 + 44403 0.73 0.31031
Target:  5'- aCGCGCGCggcauuGGCGucGACGUCGAaGCg -3'
miRNA:   3'- -GCGCGCGagcu--CCGC--UUGCAGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 29173 0.72 0.350406
Target:  5'- gGCGCGCUCGAGcgcucgugccgcGCGGucACGcUCGAcGCa -3'
miRNA:   3'- gCGCGCGAGCUC------------CGCU--UGC-AGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 21194 0.71 0.39405
Target:  5'- aCGCGCGCggCGcGGGCGA--GUgGGUGCg -3'
miRNA:   3'- -GCGCGCGa-GC-UCCGCUugCAgCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 1938 0.7 0.412467
Target:  5'- aGCGCGC-CGGcaccGGCGAcgccggcaaccGCGUCGAUcuGCu -3'
miRNA:   3'- gCGCGCGaGCU----CCGCU-----------UGCAGCUA--UG- -5'
24147 5' -55.7 NC_005263.2 + 40886 0.7 0.430447
Target:  5'- gCGCGCGCcuucuggUCGccGGCGAugGUCGcggACu -3'
miRNA:   3'- -GCGCGCG-------AGCu-CCGCUugCAGCua-UG- -5'
24147 5' -55.7 NC_005263.2 + 44174 0.69 0.501426
Target:  5'- gGCGCGUgCGAGGCGcuaGGCcuGcCGGUGCa -3'
miRNA:   3'- gCGCGCGaGCUCCGC---UUG--CaGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 32987 0.7 0.460742
Target:  5'- uGCGCGCUgcguauucgcgCGcGGCcucGACGUUGAUGCa -3'
miRNA:   3'- gCGCGCGA-----------GCuCCGc--UUGCAGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 29246 0.7 0.421873
Target:  5'- gGCGCGC-CGAGGCacGCGUUGuucACg -3'
miRNA:   3'- gCGCGCGaGCUCCGcuUGCAGCua-UG- -5'
24147 5' -55.7 NC_005263.2 + 6621 0.75 0.228583
Target:  5'- gGCGCGCUCGGcGCGGucgagcagucgcGCGUCGGUcGCu -3'
miRNA:   3'- gCGCGCGAGCUcCGCU------------UGCAGCUA-UG- -5'
24147 5' -55.7 NC_005263.2 + 47425 0.7 0.460742
Target:  5'- gGCGCGCUCGgcaAGGCGcgcuacgaugaGGCGuUCGAUc- -3'
miRNA:   3'- gCGCGCGAGC---UCCGC-----------UUGC-AGCUAug -5'
24147 5' -55.7 NC_005263.2 + 9438 0.74 0.260194
Target:  5'- cCGCGCacCUUGAucuuGGCGAgguugGCGUCGAUGCg -3'
miRNA:   3'- -GCGCGc-GAGCU----CCGCU-----UGCAGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 29063 0.7 0.421873
Target:  5'- gGCGCGUccUCGGGGCGGcgcgcaucgGCcGUCGcUACg -3'
miRNA:   3'- gCGCGCG--AGCUCCGCU---------UG-CAGCuAUG- -5'
24147 5' -55.7 NC_005263.2 + 28124 0.69 0.480875
Target:  5'- uGcCGCGC-CGGGGCGAaucuguGCGUUGAa-- -3'
miRNA:   3'- gC-GCGCGaGCUCCGCU------UGCAGCUaug -5'
24147 5' -55.7 NC_005263.2 + 31515 0.69 0.511846
Target:  5'- uCGCGCGCgagCccGGCGAacGCGUCGccGCc -3'
miRNA:   3'- -GCGCGCGa--GcuCCGCU--UGCAGCuaUG- -5'
24147 5' -55.7 NC_005263.2 + 20657 0.73 0.295278
Target:  5'- cCGCGcCGCUCGucGCGGcCGUCGAa-- -3'
miRNA:   3'- -GCGC-GCGAGCucCGCUuGCAGCUaug -5'
24147 5' -55.7 NC_005263.2 + 12134 0.71 0.385044
Target:  5'- aCGCGCGCUCcAGGCG---GUCGAg-- -3'
miRNA:   3'- -GCGCGCGAGcUCCGCuugCAGCUaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.