Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24151 | 5' | -61.3 | NC_005263.2 | + | 34066 | 0.66 | 0.393858 |
Target: 5'- cUCGaCGCGGC-GCCCGuGgccgaACCGuCGCc -3' miRNA: 3'- -AGC-GCGUCGaCGGGCuCa----UGGC-GCGc -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 29656 | 0.66 | 0.385111 |
Target: 5'- cCGCGCGGCUGCUUca----CGCGCa -3' miRNA: 3'- aGCGCGUCGACGGGcucaugGCGCGc -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 31357 | 0.66 | 0.397393 |
Target: 5'- -gGCGCGacuccauaaagcccuGCUGCUgCGGGcUGCuCGCGCGg -3' miRNA: 3'- agCGCGU---------------CGACGG-GCUC-AUG-GCGCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 6943 | 0.66 | 0.359654 |
Target: 5'- aUCGaCGaCGGCcGCCCac--GCCGCGCGa -3' miRNA: 3'- -AGC-GC-GUCGaCGGGcucaUGGCGCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 9525 | 0.66 | 0.359654 |
Target: 5'- aUCGUGCGGCcgUGCgCGGcagcgACCGaCGCGg -3' miRNA: 3'- -AGCGCGUCG--ACGgGCUca---UGGC-GCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 44771 | 0.66 | 0.351433 |
Target: 5'- gCGCGCGGCgccggcgGCgCGcAGacguugaacACCGCGCGg -3' miRNA: 3'- aGCGCGUCGa------CGgGC-UCa--------UGGCGCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 31553 | 0.66 | 0.368008 |
Target: 5'- -gGCGUcGCUGCCC-AG-GCgGCGCGc -3' miRNA: 3'- agCGCGuCGACGGGcUCaUGgCGCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 704 | 0.66 | 0.368008 |
Target: 5'- aUCGUGCcGCcGCCCGcgAGcGCCGUgGCGa -3' miRNA: 3'- -AGCGCGuCGaCGGGC--UCaUGGCG-CGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 37365 | 0.66 | 0.358826 |
Target: 5'- cCGUGCucgauGC-GCUCGAGUcugcgucgcccugGCUGCGCGa -3' miRNA: 3'- aGCGCGu----CGaCGGGCUCA-------------UGGCGCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 15763 | 0.66 | 0.385111 |
Target: 5'- aUUGCGgcgagcuccuuCAGCUGCUCGAcgaccACUGCGCGc -3' miRNA: 3'- -AGCGC-----------GUCGACGGGCUca---UGGCGCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 12563 | 0.66 | 0.376494 |
Target: 5'- gCGcCGUAGC-GCCCGc---CCGCGCGc -3' miRNA: 3'- aGC-GCGUCGaCGGGCucauGGCGCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 17179 | 0.66 | 0.359654 |
Target: 5'- aUGCGCAGCUcGCggcguacgCCGuc-GCCGCGCu -3' miRNA: 3'- aGCGCGUCGA-CG--------GGCucaUGGCGCGc -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 34016 | 0.66 | 0.393858 |
Target: 5'- cCGCGCAGCcgGUaccagCCGAcauggGCCGgCGCGg -3' miRNA: 3'- aGCGCGUCGa-CG-----GGCUca---UGGC-GCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 29746 | 0.66 | 0.368008 |
Target: 5'- aUCGUcuGCAGgUGCgCCGGGUuCUGCGgGu -3' miRNA: 3'- -AGCG--CGUCgACG-GGCUCAuGGCGCgC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 18771 | 0.66 | 0.368008 |
Target: 5'- gCGCGguGCUcGCgCUG-GUuaucgugcucGCCGCGCGc -3' miRNA: 3'- aGCGCguCGA-CG-GGCuCA----------UGGCGCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 22227 | 0.66 | 0.368008 |
Target: 5'- gUCGC-CGGCgucgGCCCG-GUugCGaCGCc -3' miRNA: 3'- -AGCGcGUCGa---CGGGCuCAugGC-GCGc -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 41549 | 0.66 | 0.351433 |
Target: 5'- aCGCGCGGCgcGCCguggcggcgaugCGAGcuuUCGCGCGu -3' miRNA: 3'- aGCGCGUCGa-CGG------------GCUCau-GGCGCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 14383 | 0.66 | 0.376494 |
Target: 5'- cCGgGCcGCUcGUCCGGGUGCgGCaGCa -3' miRNA: 3'- aGCgCGuCGA-CGGGCUCAUGgCG-CGc -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 3001 | 0.66 | 0.351433 |
Target: 5'- cUCGC-CGGCgcauccGCCgCGAcGUAgCGCGCGa -3' miRNA: 3'- -AGCGcGUCGa-----CGG-GCU-CAUgGCGCGC- -5' |
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24151 | 5' | -61.3 | NC_005263.2 | + | 37237 | 0.66 | 0.351433 |
Target: 5'- gCGCGCcGgUG-CCGAGUuCCGcCGCGa -3' miRNA: 3'- aGCGCGuCgACgGGCUCAuGGC-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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