miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24151 5' -61.3 NC_005263.2 + 704 0.66 0.368008
Target:  5'- aUCGUGCcGCcGCCCGcgAGcGCCGUgGCGa -3'
miRNA:   3'- -AGCGCGuCGaCGGGC--UCaUGGCG-CGC- -5'
24151 5' -61.3 NC_005263.2 + 1117 0.69 0.250512
Target:  5'- gUCGCGC-GCgaaGUCCGcgccGUGCUGCGCa -3'
miRNA:   3'- -AGCGCGuCGa--CGGGCu---CAUGGCGCGc -5'
24151 5' -61.3 NC_005263.2 + 1167 0.68 0.297671
Target:  5'- cCGuCGCGGCgacuugUGCCUc-GUGCUGCGCGg -3'
miRNA:   3'- aGC-GCGUCG------ACGGGcuCAUGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 2256 0.7 0.199126
Target:  5'- aCGUGUAGUUGUUCGAGcGCaGCGCGu -3'
miRNA:   3'- aGCGCGUCGACGGGCUCaUGgCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 2426 0.73 0.13381
Target:  5'- -aGCgGCAGCgUGCCUuGGUACgGCGCGg -3'
miRNA:   3'- agCG-CGUCG-ACGGGcUCAUGgCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 2694 0.74 0.10188
Target:  5'- aUCGCGCGGCcGCUCGgcaGGUGCaUGCGCa -3'
miRNA:   3'- -AGCGCGUCGaCGGGC---UCAUG-GCGCGc -5'
24151 5' -61.3 NC_005263.2 + 2882 0.7 0.209688
Target:  5'- gUCGCaGCGGCgaggcugauguUGgCCGAgacGUGCUGCGCGg -3'
miRNA:   3'- -AGCG-CGUCG-----------ACgGGCU---CAUGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 3001 0.66 0.351433
Target:  5'- cUCGC-CGGCgcauccGCCgCGAcGUAgCGCGCGa -3'
miRNA:   3'- -AGCGcGUCGa-----CGG-GCU-CAUgGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 3281 0.73 0.126762
Target:  5'- aUCGCcucGCAGUccgccguuuucuUGCCUGGGcgcgGCCGCGCGg -3'
miRNA:   3'- -AGCG---CGUCG------------ACGGGCUCa---UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 3664 0.67 0.335395
Target:  5'- gUGUGCAGCUcGUUCGAGacagugccgGCCGuCGCGu -3'
miRNA:   3'- aGCGCGUCGA-CGGGCUCa--------UGGC-GCGC- -5'
24151 5' -61.3 NC_005263.2 + 4292 0.67 0.304945
Target:  5'- aUCGUGCccGGCUcGUCCGGGUucaccugugugAUCGCGCc -3'
miRNA:   3'- -AGCGCG--UCGA-CGGGCUCA-----------UGGCGCGc -5'
24151 5' -61.3 NC_005263.2 + 5094 0.68 0.276661
Target:  5'- cCGCGCAGUgcuUGCaCGAGUagACCcauaGCGCGu -3'
miRNA:   3'- aGCGCGUCG---ACGgGCUCA--UGG----CGCGC- -5'
24151 5' -61.3 NC_005263.2 + 6363 0.7 0.18903
Target:  5'- aUCGCGCcguGCcGCCCGAaGuUGCCGCccGCGu -3'
miRNA:   3'- -AGCGCGu--CGaCGGGCU-C-AUGGCG--CGC- -5'
24151 5' -61.3 NC_005263.2 + 6542 0.66 0.393858
Target:  5'- aCGCGCgaaAGCUcgcaucgccGCCaCGGcGcGCCGCGCGu -3'
miRNA:   3'- aGCGCG---UCGA---------CGG-GCU-CaUGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 6943 0.66 0.359654
Target:  5'- aUCGaCGaCGGCcGCCCac--GCCGCGCGa -3'
miRNA:   3'- -AGC-GC-GUCGaCGGGcucaUGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 7192 0.67 0.343347
Target:  5'- -gGCGCAGUaGauaCCGAGU--CGCGCGa -3'
miRNA:   3'- agCGCGUCGaCg--GGCUCAugGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 7479 0.73 0.120058
Target:  5'- cUUGCGC-GCUugGCCuCGaAGUGCCGCGCa -3'
miRNA:   3'- -AGCGCGuCGA--CGG-GC-UCAUGGCGCGc -5'
24151 5' -61.3 NC_005263.2 + 7664 0.67 0.335395
Target:  5'- gCGuUGCGGCcuuUGCCCGucuucaaccgGGUucgagucgGCCGCGCGg -3'
miRNA:   3'- aGC-GCGUCG---ACGGGC----------UCA--------UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 8854 0.67 0.338559
Target:  5'- gCGCGCAGCUcGgCCGAcgggauacgcggcccGUGCUGC-CGg -3'
miRNA:   3'- aGCGCGUCGA-CgGGCU---------------CAUGGCGcGC- -5'
24151 5' -61.3 NC_005263.2 + 9198 0.7 0.203821
Target:  5'- -gGCGCGGC-GCCCGgcuugcucgugacGGUGCCGUcgGCGu -3'
miRNA:   3'- agCGCGUCGaCGGGC-------------UCAUGGCG--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.