miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24151 5' -61.3 NC_005263.2 + 34258 1.09 0.000235
Target:  5'- cUCGCGCAGCUGCCCGAGUACCGCGCGa -3'
miRNA:   3'- -AGCGCGUCGACGGGCUCAUGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 22725 0.79 0.045239
Target:  5'- gUCGCGCAGCUG-CCGAacGUGCC-CGCGa -3'
miRNA:   3'- -AGCGCGUCGACgGGCU--CAUGGcGCGC- -5'
24151 5' -61.3 NC_005263.2 + 14877 0.78 0.053614
Target:  5'- uUCGCGCAGCUugucGgCCGAGUGCagGUGCGg -3'
miRNA:   3'- -AGCGCGUCGA----CgGGCUCAUGg-CGCGC- -5'
24151 5' -61.3 NC_005263.2 + 45399 0.77 0.063486
Target:  5'- aCGCGC-GCUGCgcaugcaccugCCGAGcgGCCGCGCGa -3'
miRNA:   3'- aGCGCGuCGACG-----------GGCUCa-UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 38654 0.75 0.096419
Target:  5'- gCGCGCcGCUGCCCGuGGUGCC-CGUc -3'
miRNA:   3'- aGCGCGuCGACGGGC-UCAUGGcGCGc -5'
24151 5' -61.3 NC_005263.2 + 19025 0.74 0.101042
Target:  5'- cUCGCGUAGCgacgGCcgaugcgcgccgccCCGAGgacgcGCCGCGCGg -3'
miRNA:   3'- -AGCGCGUCGa---CG--------------GGCUCa----UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 2694 0.74 0.10188
Target:  5'- aUCGCGCGGCcGCUCGgcaGGUGCaUGCGCa -3'
miRNA:   3'- -AGCGCGUCGaCGGGC---UCAUG-GCGCGc -5'
24151 5' -61.3 NC_005263.2 + 18906 0.73 0.116832
Target:  5'- aCGCGcCGGcCUGCgUCGAGcgugACCGCGCGg -3'
miRNA:   3'- aGCGC-GUC-GACG-GGCUCa---UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 18212 0.73 0.120058
Target:  5'- gCGCGCAguaucacacGCUGUCCG---GCCGCGCGa -3'
miRNA:   3'- aGCGCGU---------CGACGGGCucaUGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 17488 0.73 0.120058
Target:  5'- -gGCGCAGCauccucgacaUGCCCGAGgaugaucugAUCGCGCu -3'
miRNA:   3'- agCGCGUCG----------ACGGGCUCa--------UGGCGCGc -5'
24151 5' -61.3 NC_005263.2 + 7479 0.73 0.120058
Target:  5'- cUUGCGC-GCUugGCCuCGaAGUGCCGCGCa -3'
miRNA:   3'- -AGCGCGuCGA--CGG-GC-UCAUGGCGCGc -5'
24151 5' -61.3 NC_005263.2 + 17844 0.73 0.123368
Target:  5'- aUUGCGCAGCgcuucGCCgaCGAcUACCGCGCa -3'
miRNA:   3'- -AGCGCGUCGa----CGG--GCUcAUGGCGCGc -5'
24151 5' -61.3 NC_005263.2 + 3281 0.73 0.126762
Target:  5'- aUCGCcucGCAGUccgccguuuucuUGCCUGGGcgcgGCCGCGCGg -3'
miRNA:   3'- -AGCG---CGUCG------------ACGGGCUCa---UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 27962 0.73 0.126762
Target:  5'- -gGCGCGGaugGCCCaGAGcUGCUGCGCGc -3'
miRNA:   3'- agCGCGUCga-CGGG-CUC-AUGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 2426 0.73 0.13381
Target:  5'- -aGCgGCAGCgUGCCUuGGUACgGCGCGg -3'
miRNA:   3'- agCG-CGUCG-ACGGGcUCAUGgCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 46156 0.72 0.137098
Target:  5'- aUCGaCGCGGUUGCCgGcgucgccGGUGCCgGCGCGc -3'
miRNA:   3'- -AGC-GCGUCGACGGgC-------UCAUGG-CGCGC- -5'
24151 5' -61.3 NC_005263.2 + 40918 0.72 0.137468
Target:  5'- -gGCGCAGCcgcacauaCCCGGGUAUCGCaGCGg -3'
miRNA:   3'- agCGCGUCGac------GGGCUCAUGGCG-CGC- -5'
24151 5' -61.3 NC_005263.2 + 26817 0.72 0.141598
Target:  5'- gUCGCGUAGUuggcgcccaugaccUGCCCGAGcccccaagagcagcACUGCGCGg -3'
miRNA:   3'- -AGCGCGUCG--------------ACGGGCUCa-------------UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 29149 0.72 0.146624
Target:  5'- gUCGUGcCGGCUGCgcucguaaCCGGcgcgcucgagcgcucGUGCCGCGCGg -3'
miRNA:   3'- -AGCGC-GUCGACG--------GGCU---------------CAUGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 18133 0.72 0.157169
Target:  5'- aCGCGCugaucgcGCUGCCCGcc-GCUGCGCa -3'
miRNA:   3'- aGCGCGu------CGACGGGCucaUGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.