miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24160 3' -54.6 NC_005263.2 + 41584 0.66 0.751302
Target:  5'- -gCGCGuAUG-CGCGCCGCUUUcGCu -3'
miRNA:   3'- ugGCGCuUGCuGCGCGGUGAAAcUGc -5'
24160 3' -54.6 NC_005263.2 + 35730 0.66 0.718449
Target:  5'- gACgGCGAgacgccggaagaaGCGGCGCGgCGCga-GACGc -3'
miRNA:   3'- -UGgCGCU-------------UGCUGCGCgGUGaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 8015 0.66 0.70874
Target:  5'- cGCCGuCGAuuuugaugucuuGCGAgGCGuCCGCgccgUGGCGc -3'
miRNA:   3'- -UGGC-GCU------------UGCUgCGC-GGUGaa--ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 41493 0.66 0.70874
Target:  5'- gACCGCGc-CGAgCGCGCCGCcgaacGCGa -3'
miRNA:   3'- -UGGCGCuuGCU-GCGCGGUGaaac-UGC- -5'
24160 3' -54.6 NC_005263.2 + 30533 0.66 0.70874
Target:  5'- -gCGCGAGCagcucGAUGCGCUGCUc-GACGu -3'
miRNA:   3'- ugGCGCUUG-----CUGCGCGGUGAaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 2870 0.66 0.70874
Target:  5'- uUCGCGAACGACGuCGCaGC---GGCGa -3'
miRNA:   3'- uGGCGCUUGCUGC-GCGgUGaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 9415 0.66 0.70874
Target:  5'- uAUCGCGGcuGCGGCGCuguuaGCCGCgcaccuugaucUUGGCGa -3'
miRNA:   3'- -UGGCGCU--UGCUGCG-----CGGUGa----------AACUGC- -5'
24160 3' -54.6 NC_005263.2 + 38642 0.66 0.70874
Target:  5'- aGCUGC-AGCcgGGCGCGCCGCUgcccGugGu -3'
miRNA:   3'- -UGGCGcUUG--CUGCGCGGUGAaa--CugC- -5'
24160 3' -54.6 NC_005263.2 + 35769 0.66 0.719524
Target:  5'- uACUGCGGcugGCGGCGUGCCAUa------ -3'
miRNA:   3'- -UGGCGCU---UGCUGCGCGGUGaaacugc -5'
24160 3' -54.6 NC_005263.2 + 18799 0.66 0.719524
Target:  5'- cGCCGCGcGCGAUGCGCaUGCc--GACc -3'
miRNA:   3'- -UGGCGCuUGCUGCGCG-GUGaaaCUGc -5'
24160 3' -54.6 NC_005263.2 + 9527 0.66 0.719524
Target:  5'- cGCCGUGAGCGcgucggacggcaACGCGUCGCacaggucGACa -3'
miRNA:   3'- -UGGCGCUUGC------------UGCGCGGUGaaa----CUGc -5'
24160 3' -54.6 NC_005263.2 + 13764 0.66 0.73022
Target:  5'- cACgGCGAcaGGCGCGUCGCUUaaugGGCc -3'
miRNA:   3'- -UGgCGCUugCUGCGCGGUGAAa---CUGc -5'
24160 3' -54.6 NC_005263.2 + 31067 0.66 0.751302
Target:  5'- cCCGuCGAucgucuuggccGCGACGCGCUGCUcgaGCGa -3'
miRNA:   3'- uGGC-GCU-----------UGCUGCGCGGUGAaacUGC- -5'
24160 3' -54.6 NC_005263.2 + 29924 0.66 0.751302
Target:  5'- -aUGCGGACGuaGCGCGCCGCa------ -3'
miRNA:   3'- ugGCGCUUGC--UGCGCGGUGaaacugc -5'
24160 3' -54.6 NC_005263.2 + 10261 0.66 0.751302
Target:  5'- gAUCGCGAuGCGcuucgcauCGCGCCGCUucgcauccUUGGCc -3'
miRNA:   3'- -UGGCGCU-UGCu-------GCGCGGUGA--------AACUGc -5'
24160 3' -54.6 NC_005263.2 + 18518 0.66 0.751302
Target:  5'- gAUCGCGAugGACGCGaUCAaagcGGCu -3'
miRNA:   3'- -UGGCGCUugCUGCGC-GGUgaaaCUGc -5'
24160 3' -54.6 NC_005263.2 + 6036 0.66 0.751302
Target:  5'- uCCGCGAGC-ACGCcCCGuucgUUGGCGg -3'
miRNA:   3'- uGGCGCUUGcUGCGcGGUga--AACUGC- -5'
24160 3' -54.6 NC_005263.2 + 35531 0.66 0.750259
Target:  5'- gACUGCGcccGGCGGCGCGCgggcgggCGCUacGGCGc -3'
miRNA:   3'- -UGGCGC---UUGCUGCGCG-------GUGAaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 21861 0.66 0.740817
Target:  5'- cGCCGCGuucGCGACG-GCCggcaagacGCUaucgaccgagUUGACGa -3'
miRNA:   3'- -UGGCGCu--UGCUGCgCGG--------UGA----------AACUGC- -5'
24160 3' -54.6 NC_005263.2 + 33464 0.66 0.740817
Target:  5'- gACgGCGGACGAgCGCGUaugGCUgaucgacUGGCGa -3'
miRNA:   3'- -UGgCGCUUGCU-GCGCGg--UGAa------ACUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.